Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03394 and MPMX19_03395 overlap by 4 nucleotides MPMX19_03395 and MPMX19_03396 are separated by 5 nucleotides MPMX19_03396 and MPMX19_03397 are separated by 33 nucleotides
MPMX19_03394: MPMX19_03394 - hypothetical protein, at 780,303 to 781,343
_03394
MPMX19_03395: MPMX19_03395 - Lipopolysaccharide export system ATP-binding protein LptB, at 781,340 to 782,113
_03395
MPMX19_03396: MPMX19_03396 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 782,119 to 782,826
_03396
MPMX19_03397: MPMX19_03397 - Acetylornithine deacetylase, at 782,860 to 784,023
_03397
Position (kb) 782
783 Strain fitness (log2 ratio) -2
-1
0
1 at 782.096 kb on + strand at 782.096 kb on + strand at 782.097 kb on - strand at 782.149 kb on + strand at 782.150 kb on - strand at 782.652 kb on + strand, within MPMX19_03396 at 782.652 kb on + strand, within MPMX19_03396 at 782.652 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 783.111 kb on - strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.614 kb on + strand, within MPMX19_03397 at 783.614 kb on + strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 782,096 + -0.5 782,096 + +0.6 782,097 - +1.7 782,149 + -1.0 782,150 - -0.3 782,652 + MPMX19_03396 0.75 -0.3 782,652 + MPMX19_03396 0.75 -0.7 782,652 + MPMX19_03396 0.75 -1.4 782,737 + MPMX19_03396 0.87 -0.7 782,737 + MPMX19_03396 0.87 -0.1 782,737 + MPMX19_03396 0.87 +0.1 782,738 - MPMX19_03396 0.87 -2.2 782,738 - MPMX19_03396 0.87 -2.0 782,738 - MPMX19_03396 0.87 -0.4 782,738 - MPMX19_03396 0.87 -0.4 782,738 - MPMX19_03396 0.87 -2.4 783,111 - MPMX19_03397 0.22 -2.4 783,332 + MPMX19_03397 0.41 +0.1 783,332 + MPMX19_03397 0.41 -0.4 783,332 + MPMX19_03397 0.41 +0.2 783,332 + MPMX19_03397 0.41 +0.1 783,332 + MPMX19_03397 0.41 -0.4 783,332 + MPMX19_03397 0.41 -0.2 783,332 + MPMX19_03397 0.41 -1.1 783,333 - MPMX19_03397 0.41 -0.6 783,333 - MPMX19_03397 0.41 +0.7 783,333 - MPMX19_03397 0.41 -0.1 783,333 - MPMX19_03397 0.41 -0.8 783,333 - MPMX19_03397 0.41 +0.4 783,333 - MPMX19_03397 0.41 -0.8 783,333 - MPMX19_03397 0.41 -0.5 783,333 - MPMX19_03397 0.41 -0.0 783,614 + MPMX19_03397 0.65 -1.0 783,614 + MPMX19_03397 0.65 +0.5 783,615 - MPMX19_03397 0.65 +0.1 783,615 - MPMX19_03397 0.65 -0.3 783,615 - MPMX19_03397 0.65 -0.6 783,615 - MPMX19_03397 0.65 +0.4 783,615 - MPMX19_03397 0.65 -0.7 783,615 - MPMX19_03397 0.65 -1.1 783,615 - MPMX19_03397 0.65 -0.1
Or see this region's nucleotide sequence