Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03340

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03339 and MPMX19_03340 are separated by 91 nucleotidesMPMX19_03340 and MPMX19_03341 are separated by 49 nucleotides MPMX19_03339: MPMX19_03339 - hypothetical protein, at 694,548 to 696,389 _03339 MPMX19_03340: MPMX19_03340 - hypothetical protein, at 696,481 to 697,086 _03340 MPMX19_03341: MPMX19_03341 - Cobalt-zinc-cadmium resistance protein CzcA, at 697,136 to 700,249 _03341 Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.626 kb on - strand, within MPMX19_03339at 695.626 kb on - strand, within MPMX19_03339at 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.388 kb on - strandat 696.465 kb on + strandat 696.465 kb on + strandat 696.465 kb on + strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.746 kb on - strand, within MPMX19_03340at 696.835 kb on + strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 697.334 kb on + strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.360 kb on + strandat 697.360 kb on + strandat 697.361 kb on - strandat 697.361 kb on - strandat 697.361 kb on - strandat 697.361 kb on - strandat 697.415 kb on + strandat 697.415 kb on + strandat 697.415 kb on + strandat 697.415 kb on + strandat 697.415 kb on + strandat 697.415 kb on + strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.416 kb on - strandat 697.633 kb on + strand, within MPMX19_03341at 697.633 kb on + strand, within MPMX19_03341at 697.634 kb on - strand, within MPMX19_03341at 697.634 kb on - strand, within MPMX19_03341at 697.634 kb on - strand, within MPMX19_03341at 697.634 kb on - strand, within MPMX19_03341at 697.634 kb on - strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.661 kb on + strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.662 kb on - strand, within MPMX19_03341at 697.689 kb on - strand, within MPMX19_03341at 697.802 kb on + strand, within MPMX19_03341at 697.802 kb on + strand, within MPMX19_03341at 697.802 kb on + strand, within MPMX19_03341at 697.802 kb on + strand, within MPMX19_03341at 697.802 kb on + strand, within MPMX19_03341at 697.803 kb on - strand, within MPMX19_03341at 697.803 kb on - strand, within MPMX19_03341at 697.803 kb on - strand, within MPMX19_03341at 697.803 kb on - strand, within MPMX19_03341at 697.803 kb on - strand, within MPMX19_03341at 697.877 kb on + strand, within MPMX19_03341at 697.877 kb on + strand, within MPMX19_03341at 697.877 kb on + strand, within MPMX19_03341at 697.877 kb on + strand, within MPMX19_03341at 697.878 kb on - strand, within MPMX19_03341

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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695,625 + MPMX19_03339 0.58 -1.0
695,625 + MPMX19_03339 0.58 -0.4
695,625 + MPMX19_03339 0.58 -0.6
695,625 + MPMX19_03339 0.58 +0.1
695,626 - MPMX19_03339 0.59 +0.5
695,626 - MPMX19_03339 0.59 +0.9
696,278 + -1.0
696,278 + -0.4
696,278 + +1.3
696,278 + -0.1
696,278 + -1.9
696,278 + +0.3
696,279 - -0.4
696,279 - +0.1
696,279 - -0.5
696,279 - -0.1
696,279 - -0.7
696,388 - +0.1
696,465 + +0.6
696,465 + +0.6
696,465 + -0.8
696,466 - +0.3
696,466 - -2.9
696,466 - -0.6
696,466 - +0.7
696,466 - -0.8
696,466 - -1.1
696,746 - MPMX19_03340 0.44 +0.4
696,835 + MPMX19_03340 0.58 -1.2
696,836 - MPMX19_03340 0.59 -1.3
696,836 - MPMX19_03340 0.59 +0.5
696,836 - MPMX19_03340 0.59 -1.4
696,851 - MPMX19_03340 0.61 -0.3
696,851 - MPMX19_03340 0.61 -0.2
696,851 - MPMX19_03340 0.61 -0.6
697,334 + -0.6
697,335 - -1.7
697,335 - -1.3
697,335 - +0.3
697,335 - -0.5
697,360 + +0.1
697,360 + +0.7
697,361 - -0.1
697,361 - +0.3
697,361 - -1.1
697,361 - -0.0
697,415 + +0.7
697,415 + -0.4
697,415 + -1.7
697,415 + -0.2
697,415 + +1.5
697,415 + -0.9
697,416 - -1.3
697,416 - -1.2
697,416 - -1.2
697,416 - +0.5
697,416 - -1.9
697,416 - +0.4
697,416 - -0.2
697,416 - -0.3
697,416 - -1.2
697,633 + MPMX19_03341 0.16 +0.6
697,633 + MPMX19_03341 0.16 -1.0
697,634 - MPMX19_03341 0.16 +1.5
697,634 - MPMX19_03341 0.16 +0.2
697,634 - MPMX19_03341 0.16 +0.6
697,634 - MPMX19_03341 0.16 -0.9
697,634 - MPMX19_03341 0.16 -0.6
697,661 + MPMX19_03341 0.17 -1.6
697,661 + MPMX19_03341 0.17 -1.2
697,661 + MPMX19_03341 0.17 -1.6
697,661 + MPMX19_03341 0.17 +1.1
697,661 + MPMX19_03341 0.17 -0.0
697,661 + MPMX19_03341 0.17 +0.0
697,661 + MPMX19_03341 0.17 -2.5
697,662 - MPMX19_03341 0.17 -0.9
697,662 - MPMX19_03341 0.17 +0.2
697,662 - MPMX19_03341 0.17 -1.0
697,662 - MPMX19_03341 0.17 -0.7
697,662 - MPMX19_03341 0.17 -1.1
697,662 - MPMX19_03341 0.17 +0.3
697,662 - MPMX19_03341 0.17 +0.0
697,662 - MPMX19_03341 0.17 -0.5
697,662 - MPMX19_03341 0.17 -0.3
697,662 - MPMX19_03341 0.17 +0.7
697,689 - MPMX19_03341 0.18 -0.3
697,802 + MPMX19_03341 0.21 -2.4
697,802 + MPMX19_03341 0.21 -0.0
697,802 + MPMX19_03341 0.21 +0.4
697,802 + MPMX19_03341 0.21 +0.1
697,802 + MPMX19_03341 0.21 +0.7
697,803 - MPMX19_03341 0.21 +0.5
697,803 - MPMX19_03341 0.21 +0.4
697,803 - MPMX19_03341 0.21 -0.0
697,803 - MPMX19_03341 0.21 -1.4
697,803 - MPMX19_03341 0.21 +1.1
697,877 + MPMX19_03341 0.24 -0.7
697,877 + MPMX19_03341 0.24 +0.1
697,877 + MPMX19_03341 0.24 -1.3
697,877 + MPMX19_03341 0.24 +0.1
697,878 - MPMX19_03341 0.24 -1.2

Or see this region's nucleotide sequence