Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03296 and MPMX19_03297 overlap by 4 nucleotides MPMX19_03297 and MPMX19_03298 are separated by 11 nucleotides MPMX19_03298 and MPMX19_03299 are separated by 29 nucleotides
MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093
_03296
MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803
_03297
MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546
_03298
MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475
_03299
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.611 kb on + strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.885 kb on - strand, within MPMX19_03296 at 644.224 kb on + strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.304 kb on - strand, within MPMX19_03297 at 644.808 kb on + strand at 645.008 kb on + strand, within MPMX19_03298 at 645.008 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.462 kb on - strand, within MPMX19_03298 at 645.644 kb on + strand at 645.644 kb on + strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 643,452 + MPMX19_03296 0.32 -1.2 643,452 + MPMX19_03296 0.32 -0.4 643,452 + MPMX19_03296 0.32 +0.3 643,452 + MPMX19_03296 0.32 -2.0 643,452 - MPMX19_03296 0.32 -2.2 643,453 - MPMX19_03296 0.32 +0.5 643,453 - MPMX19_03296 0.32 -0.2 643,611 + MPMX19_03296 0.49 -0.4 643,612 - MPMX19_03296 0.49 -0.3 643,612 - MPMX19_03296 0.49 -0.0 643,612 - MPMX19_03296 0.49 +1.1 643,653 + MPMX19_03296 0.53 +0.6 643,653 + MPMX19_03296 0.53 -0.6 643,653 + MPMX19_03296 0.53 -1.1 643,654 - MPMX19_03296 0.53 -0.9 643,654 - MPMX19_03296 0.53 -0.2 643,654 - MPMX19_03296 0.53 -0.4 643,848 + MPMX19_03296 0.74 +0.4 643,848 + MPMX19_03296 0.74 +1.1 643,848 + MPMX19_03296 0.74 -2.3 643,849 - MPMX19_03296 0.74 +0.2 643,849 - MPMX19_03296 0.74 -0.8 643,849 - MPMX19_03296 0.74 -0.2 643,849 - MPMX19_03296 0.74 -0.3 643,849 - MPMX19_03296 0.74 +0.9 643,884 + MPMX19_03296 0.78 -0.2 643,884 + MPMX19_03296 0.78 -2.0 643,884 + MPMX19_03296 0.78 +0.0 643,884 + MPMX19_03296 0.78 +0.4 643,885 - MPMX19_03296 0.78 +0.7 644,224 + MPMX19_03297 0.19 -0.9 644,225 - MPMX19_03297 0.19 -0.7 644,225 - MPMX19_03297 0.19 -0.8 644,225 - MPMX19_03297 0.19 -1.1 644,304 - MPMX19_03297 0.30 -1.3 644,808 + +0.5 645,008 + MPMX19_03298 0.26 -0.4 645,008 + MPMX19_03298 0.26 +0.7 645,461 + MPMX19_03298 0.88 -0.3 645,461 + MPMX19_03298 0.88 +1.7 645,462 - MPMX19_03298 0.88 -0.0 645,644 + -0.7 645,644 + +0.6 645,645 - -2.2 645,645 - +0.7 645,645 - -1.6 645,645 - -0.3 645,645 - -1.0 645,645 - -0.3 645,645 - -1.4
Or see this region's nucleotide sequence