Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02999 and MPMX19_03000 are separated by 14 nucleotides MPMX19_03000 and MPMX19_03001 overlap by 4 nucleotides MPMX19_03001 and MPMX19_03002 are separated by 108 nucleotides MPMX19_03002 and MPMX19_03003 overlap by 8 nucleotides
MPMX19_02999: MPMX19_02999 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 261,795 to 262,547
_02999
MPMX19_03000: MPMX19_03000 - Galactitol 2-dehydrogenase, at 262,562 to 263,308
_03000
MPMX19_03001: MPMX19_03001 - Ribulokinase, at 263,305 to 264,834
_03001
MPMX19_03002: MPMX19_03002 - hypothetical protein, at 264,943 to 265,278
_03002
MPMX19_03003: MPMX19_03003 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 265,271 to 266,587
_03003
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.575 kb on + strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.755 kb on + strand, within MPMX19_03000 at 262.755 kb on + strand, within MPMX19_03000 at 262.756 kb on - strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.375 kb on + strand at 263.376 kb on - strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.408 kb on + strand at 263.408 kb on + strand at 263.409 kb on - strand at 263.409 kb on - strand at 263.409 kb on - strand at 263.783 kb on + strand, within MPMX19_03001 at 263.783 kb on + strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.979 kb on - strand, within MPMX19_03001 at 264.287 kb on + strand, within MPMX19_03001 at 264.288 kb on - strand, within MPMX19_03001 at 264.288 kb on - strand, within MPMX19_03001 at 264.363 kb on - strand, within MPMX19_03001 at 264.740 kb on + strand at 264.741 kb on - strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.783 kb on - strand at 264.783 kb on - strand at 264.783 kb on - strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.867 kb on - strand at 264.867 kb on - strand at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.083 kb on - strand, within MPMX19_03002 at 265.083 kb on - strand, within MPMX19_03002
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 262,575 + -1.6 262,576 - -1.4 262,576 - -0.8 262,576 - -1.8 262,755 + MPMX19_03000 0.26 +0.3 262,755 + MPMX19_03000 0.26 -0.9 262,756 - MPMX19_03000 0.26 +0.1 262,848 + MPMX19_03000 0.38 -1.1 262,848 + MPMX19_03000 0.38 +0.2 262,848 + MPMX19_03000 0.38 +1.2 262,849 - MPMX19_03000 0.38 +0.3 262,849 - MPMX19_03000 0.38 -1.1 262,849 - MPMX19_03000 0.38 -1.3 263,139 + MPMX19_03000 0.77 -0.3 263,139 + MPMX19_03000 0.77 -1.1 263,139 + MPMX19_03000 0.77 -2.1 263,140 - MPMX19_03000 0.77 -0.4 263,140 - MPMX19_03000 0.77 -1.2 263,375 + -0.1 263,376 - +0.3 263,387 + +0.1 263,387 + -0.1 263,387 + +0.7 263,388 - -1.6 263,388 - -0.3 263,388 - -0.9 263,396 + -1.4 263,396 + -0.8 263,396 + -1.0 263,396 + +0.5 263,397 - +1.1 263,397 - +0.3 263,397 - +0.4 263,397 - +0.4 263,408 + +0.4 263,408 + -0.4 263,409 - +0.7 263,409 - -1.0 263,409 - -0.9 263,783 + MPMX19_03001 0.31 -0.2 263,783 + MPMX19_03001 0.31 -0.6 263,784 - MPMX19_03001 0.31 +1.5 263,784 - MPMX19_03001 0.31 +1.2 263,784 - MPMX19_03001 0.31 +0.8 263,979 - MPMX19_03001 0.44 +1.1 264,287 + MPMX19_03001 0.64 -0.2 264,288 - MPMX19_03001 0.64 +0.4 264,288 - MPMX19_03001 0.64 -1.2 264,363 - MPMX19_03001 0.69 -0.1 264,740 + -1.7 264,741 - +0.8 264,782 + -0.2 264,782 + +0.1 264,782 + +0.2 264,782 + -0.2 264,782 + -1.2 264,783 - +0.6 264,783 - -0.9 264,783 - +0.5 264,827 + -0.6 264,827 + -0.1 264,827 + +0.4 264,827 + -0.9 264,827 + -0.6 264,827 + -1.4 264,828 - -1.4 264,828 - -0.7 264,828 - +0.8 264,828 - -0.5 264,828 - -1.6 264,828 - -0.5 264,828 - +0.2 264,828 - +0.6 264,828 - +0.3 264,828 - +0.9 264,828 - -0.2 264,830 + -0.7 264,830 + -0.9 264,830 + +0.6 264,830 + +0.0 264,830 + -3.0 264,830 + -0.2 264,830 + -0.2 264,830 + +0.5 264,830 + +0.8 264,830 + +0.2 264,830 + -0.3 264,830 + -2.5 264,830 + -2.1 264,831 - -1.6 264,831 - -0.2 264,831 - -0.2 264,831 - -0.8 264,831 - +0.8 264,831 - -1.4 264,831 - +1.6 264,831 - -0.8 264,831 - -0.1 264,831 - -1.7 264,867 - -0.0 264,867 - +0.2 264,983 + MPMX19_03002 0.12 -1.2 264,983 + MPMX19_03002 0.12 -0.3 264,983 + MPMX19_03002 0.12 -1.7 264,983 + MPMX19_03002 0.12 -0.7 264,983 + MPMX19_03002 0.12 +0.6 264,983 + MPMX19_03002 0.12 +0.4 264,983 + MPMX19_03002 0.12 +0.4 264,983 + MPMX19_03002 0.12 -0.4 264,983 + MPMX19_03002 0.12 +0.6 264,984 - MPMX19_03002 0.12 -1.4 264,984 - MPMX19_03002 0.12 -1.8 264,984 - MPMX19_03002 0.12 -0.4 264,984 - MPMX19_03002 0.12 +0.2 264,984 - MPMX19_03002 0.12 -1.2 264,984 - MPMX19_03002 0.12 -0.4 264,984 - MPMX19_03002 0.12 -0.6 264,984 - MPMX19_03002 0.12 -0.3 264,984 - MPMX19_03002 0.12 -0.2 264,984 - MPMX19_03002 0.12 -0.6 264,984 - MPMX19_03002 0.12 -0.6 264,984 - MPMX19_03002 0.12 -1.2 264,984 - MPMX19_03002 0.12 -0.4 264,984 - MPMX19_03002 0.12 -0.7 264,984 - MPMX19_03002 0.12 +1.0 264,984 - MPMX19_03002 0.12 +1.8 264,984 - MPMX19_03002 0.12 -0.6 264,984 - MPMX19_03002 0.12 -1.6 265,082 + MPMX19_03002 0.41 +1.0 265,082 + MPMX19_03002 0.41 +1.1 265,082 + MPMX19_03002 0.41 -0.0 265,082 + MPMX19_03002 0.41 -2.2 265,083 - MPMX19_03002 0.42 +1.3 265,083 - MPMX19_03002 0.42 -1.3
Or see this region's nucleotide sequence