Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02019

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
2,108,865	+				+0.4
2,108,865	+				-0.2
2,108,866	-				-0.2
2,109,011	+				-1.2
2,109,012	-				-2.9
2,109,126	+				+0.1
2,109,126	+				-0.7
2,109,126	+				-0.1
2,109,126	+				-0.5
2,109,126	+				-1.7
2,109,126	+				+0.4
2,109,126	+				+0.3
2,109,126	+				+0.0
2,109,126	+				-1.6
2,109,126	+				+0.2
2,109,126	+				-0.4
2,109,126	+				-0.7
2,109,126	+				+0.1
2,109,126	+				+0.6
2,109,126	+				-1.3
2,109,126	+				-1.0
2,109,126	+				+0.8
2,109,127	-				-1.6
2,109,127	-				-0.5
2,109,127	-				+0.8
2,109,127	-				-1.9
2,109,127	-				-2.6
2,109,127	-				-2.4
2,109,127	-				-0.7
2,109,127	-				-1.2
2,109,127	-				+0.4
2,109,127	-				-1.6
2,109,127	-				-1.7
2,109,127	-				-2.3
2,109,127	-				+0.0
2,109,127	-				-0.2
2,109,132	+				+0.2
2,109,132	+				-0.9
2,109,132	+				-0.9
2,109,132	+				-1.0
2,109,132	+				-0.5
2,109,132	+				-1.3
2,109,132	+				-0.6
2,109,133	-				-2.3
2,109,133	-				+0.0
2,109,133	-				-0.5
2,109,133	-				+0.9
2,109,234	+				-0.7
2,109,234	+				-0.5
2,109,234	+				-0.1
2,109,234	+				-0.1
2,109,234	+				-1.1
2,109,234	+				+0.8
2,109,234	+				+0.3
2,109,234	+				-0.2
2,109,234	+				+0.2
2,109,234	+				+0.6
2,109,235	-				-0.3
2,109,235	-				-1.2
2,109,235	-				+1.8
2,109,235	-				-0.8
2,109,235	-				-0.9
2,109,235	-				-2.0
2,109,235	-				-1.4
2,109,235	-				-1.0
2,109,235	-				-1.0
2,109,235	-				-0.3
2,109,235	-				+1.1
2,109,235	-				-2.2
2,109,235	-				-0.8
2,109,558	+		MPMX19_02019	0.28	-0.7
2,109,558	+		MPMX19_02019	0.28	-1.4
2,109,558	+		MPMX19_02019	0.28	-1.2
2,109,559	-		MPMX19_02019	0.28	-0.4
2,109,559	-		MPMX19_02019	0.28	-1.3
2,109,559	-		MPMX19_02019	0.28	-3.1
2,109,559	-		MPMX19_02019	0.28	+0.0
2,109,559	-		MPMX19_02019	0.28	-0.3
2,109,559	-		MPMX19_02019	0.28	-1.6
2,109,559	-		MPMX19_02019	0.28	+0.1
2,109,576	+		MPMX19_02019	0.29	+0.8
2,109,576	+		MPMX19_02019	0.29	-1.6
2,109,576	+		MPMX19_02019	0.29	+0.8
2,109,577	-		MPMX19_02019	0.29	-3.6
2,109,577	-		MPMX19_02019	0.29	+0.9
2,109,577	-		MPMX19_02019	0.29	-1.7
2,109,577	-		MPMX19_02019	0.29	-1.0
2,109,885	+		MPMX19_02019	0.49	+1.0
2,109,885	+		MPMX19_02019	0.49	+0.0
2,109,885	+		MPMX19_02019	0.49	-1.4
2,109,885	+		MPMX19_02019	0.49	+0.2
2,109,886	-		MPMX19_02019	0.49	-1.0
2,109,886	-		MPMX19_02019	0.49	-0.2
2,109,886	-		MPMX19_02019	0.49	+0.2
2,109,886	-		MPMX19_02019	0.49	-1.3
2,109,984	+		MPMX19_02019	0.55	-2.2
2,109,984	+		MPMX19_02019	0.55	+0.3
2,109,984	+		MPMX19_02019	0.55	-0.7
2,109,984	+		MPMX19_02019	0.55	-1.4
2,109,984	+		MPMX19_02019	0.55	-0.2
2,109,985	-		MPMX19_02019	0.55	-0.7
2,109,985	-		MPMX19_02019	0.55	-1.1
2,109,985	-		MPMX19_02019	0.55	-1.6
2,109,985	-		MPMX19_02019	0.55	+0.0
2,109,985	-		MPMX19_02019	0.55	-0.5
2,109,985	-		MPMX19_02019	0.55	-1.1
2,109,985	-		MPMX19_02019	0.55	+0.7
2,109,985	-		MPMX19_02019	0.55	-1.2
2,109,985	-		MPMX19_02019	0.55	-1.0
2,109,985	-		MPMX19_02019	0.55	-0.2
2,109,985	-		MPMX19_02019	0.55	-0.3
2,109,985	-		MPMX19_02019	0.55	-1.6
2,110,056	+		MPMX19_02019	0.59	-0.9
2,110,056	+		MPMX19_02019	0.59	+0.4
2,110,056	+		MPMX19_02019	0.59	-1.1
2,110,057	-		MPMX19_02019	0.59	-1.3
2,110,057	-		MPMX19_02019	0.59	-1.8
2,110,057	-		MPMX19_02019	0.59	-1.1
2,110,057	-		MPMX19_02019	0.59	-1.2
2,110,057	-		MPMX19_02019	0.59	-0.9
2,110,057	-		MPMX19_02019	0.59	-0.8
2,110,057	-		MPMX19_02019	0.59	-0.2
2,110,230	+		MPMX19_02019	0.70	-0.6
2,110,230	+		MPMX19_02019	0.70	+0.3
2,110,230	+		MPMX19_02019	0.70	-0.6
2,110,231	-		MPMX19_02019	0.70	-0.7
2,110,231	-		MPMX19_02019	0.70	-1.0
2,110,231	-		MPMX19_02019	0.70	+0.3
2,110,236	+		MPMX19_02019	0.70	-0.5
2,110,236	+		MPMX19_02019	0.70	+1.0
2,110,236	+		MPMX19_02019	0.70	+0.5
2,110,236	+		MPMX19_02019	0.70	+0.1
2,110,237	-		MPMX19_02019	0.70	-0.7
2,110,237	-		MPMX19_02019	0.70	+0.1
2,110,237	-		MPMX19_02019	0.70	+0.1
2,110,341	+		MPMX19_02019	0.77	-2.2
2,110,341	+		MPMX19_02019	0.77	-1.2
2,110,341	+		MPMX19_02019	0.77	-0.6
2,110,341	+		MPMX19_02019	0.77	-0.4
2,110,341	+		MPMX19_02019	0.77	-0.2
2,110,342	-		MPMX19_02019	0.77	-0.1
2,110,342	-		MPMX19_02019	0.77	+0.4
2,110,342	-		MPMX19_02019	0.77	-0.2
2,110,342	-		MPMX19_02019	0.77	+0.2
2,110,342	-		MPMX19_02019	0.77	-1.2
2,110,384	+		MPMX19_02019	0.80	+0.0
2,110,384	+		MPMX19_02019	0.80	+0.2
2,110,384	+		MPMX19_02019	0.80	-1.1
2,110,384	+		MPMX19_02019	0.80	+0.8
2,110,384	+		MPMX19_02019	0.80	-0.2
2,110,385	-		MPMX19_02019	0.80	-1.1
2,110,385	-		MPMX19_02019	0.80	-1.0
2,110,385	-		MPMX19_02019	0.80	+0.5
2,110,385	-		MPMX19_02019	0.80	+0.0
2,110,385	-		MPMX19_02019	0.80	-0.3
2,110,385	-		MPMX19_02019	0.80	+0.1
2,110,518	+		MPMX19_02019	0.88	-0.5
2,110,668	+				-0.9
2,110,668	+				-0.2
2,110,668	+				+0.3
2,110,668	+				-0.6
2,110,668	+				+0.0
2,110,668	+				+0.2
2,110,668	+				-0.6
2,110,668	+				-1.3
2,110,668	+				-0.6
2,110,668	+				-1.4
2,110,668	+				-0.3
2,110,668	+				+1.3
2,110,668	+				-0.7
2,110,668	+				-0.5
2,110,668	+				-0.4
2,110,668	+				+0.2
2,110,668	+				-0.2
2,110,668	+				-0.4
2,110,668	+				-1.0
2,110,668	+				-0.1
2,110,668	+				+0.3
2,110,668	+				-0.2
2,110,668	+				+0.6
2,110,668	+				-0.6
2,110,668	+				+0.4
2,110,668	+				-0.9
2,110,668	+				+0.3
2,110,668	+				-0.5
2,110,668	+				-0.4
2,110,668	+				+0.9
2,110,668	+				-1.2
2,110,668	+				-0.1
2,110,668	+				-0.2
2,110,669	-				-0.1
2,110,669	-				+0.0
2,110,669	-				-1.0
2,110,669	-				-0.3
2,110,669	-				-0.8
2,110,669	-				-2.3
2,110,669	-				+0.1
2,110,669	-				+0.4
2,110,669	-				+0.0
2,110,669	-				-0.2
2,110,669	-				+0.3
2,110,669	-				+0.5
2,110,669	-				+0.3
2,110,669	-				+0.7
2,110,669	-				-0.9
2,110,669	-				-0.7
2,110,669	-				-0.2
2,110,669	-				+0.4
2,110,669	-				+0.6
2,110,669	-				+1.5
2,110,669	-				-0.2
2,110,669	-				-2.4
2,110,669	-				+0.6
2,110,669	-				-0.7
2,110,674	+				-2.2
2,110,674	+				+0.1
2,110,674	+				-1.1
2,110,674	+				-1.0
2,110,674	+				+0.6
2,110,674	+				-0.6
2,110,674	+				-0.7
2,110,674	+				-1.1
2,110,674	+				-2.1
2,110,674	+				+0.1
2,110,674	+				-0.6
2,110,674	+				+0.0
2,110,674	+				-0.4
2,110,675	-				-1.0
2,110,675	-				-1.6
2,110,675	-				-0.4
2,110,675	-				+0.4
2,110,675	-				+0.0
2,110,675	-				-2.3
2,110,675	-				-0.3
2,110,675	-				-1.4
2,110,675	-				-0.2
2,110,675	-				-0.3
2,110,675	-				+1.2
2,110,675	-				+0.0
2,110,675	-				-0.8
2,110,707	+				+0.0
2,110,707	+				-0.5
2,110,707	+				-0.1
2,110,707	+				-2.1
2,110,707	+				+1.3
2,110,707	+				-0.2
2,110,707	+				-1.2
2,110,707	+				-0.5
2,110,708	-				+0.3
2,110,708	-				-0.2
2,110,708	-				-1.2
2,110,708	-				+0.1
2,110,764	-				-0.7
2,110,764	-				-1.4
2,110,764	-				+0.0
2,110,764	-				-0.8
2,110,764	-				+0.4
2,110,767	+				+0.0
2,110,767	+				-1.0
2,110,767	+				-0.3
2,110,767	+				-0.7
2,110,767	+				-0.8
2,110,767	+				-0.3
2,110,767	+				+0.4
2,110,767	+				-0.4
2,110,767	+				+1.1
2,110,768	-				+0.4
2,110,768	-				-0.4
2,110,768	-				-1.0
2,110,768	-				+0.1
2,110,768	-				-0.8
2,110,768	-				+0.2
2,110,768	-				-1.5
2,110,825	+				+0.0
2,110,826	-				-1.4
2,110,878	+				-0.5
2,110,878	+				+0.4
2,110,878	+				-0.1
2,110,878	+				+0.5
2,110,878	+				-0.1
2,110,878	+				+1.6
2,110,879	-				-0.7
2,110,879	-				-1.3
2,110,879	-				+0.7
2,110,879	-				-0.2
2,110,879	-				-0.2
2,110,879	-				-1.8
2,110,880	+				-0.1
2,110,880	+				-0.1
2,110,880	+				-0.5
2,110,881	-				+1.3
2,111,043	+		MPMX19_02020	0.39	-1.0
2,111,043	+		MPMX19_02020	0.39	-0.3
2,111,043	+		MPMX19_02020	0.39	+0.0
2,111,043	+		MPMX19_02020	0.39	-1.0
2,111,043	+		MPMX19_02020	0.39	-0.7
2,111,043	+		MPMX19_02020	0.39	-2.2
2,111,043	+		MPMX19_02020	0.39	-1.4
2,111,043	+		MPMX19_02020	0.39	-1.6
2,111,044	-		MPMX19_02020	0.39	-1.6
2,111,044	-		MPMX19_02020	0.39	-0.7
2,111,044	-		MPMX19_02020	0.39	+0.2
2,111,044	-		MPMX19_02020	0.39	-0.3
2,111,044	-		MPMX19_02020	0.39	-1.2
2,111,044	-		MPMX19_02020	0.39	+0.4
2,111,044	-		MPMX19_02020	0.39	+0.7
2,111,044	-		MPMX19_02020	0.39	+0.6
2,111,044	-		MPMX19_02020	0.39	+0.2
2,111,044	-		MPMX19_02020	0.39	-0.1
2,111,326	-				-0.7
2,111,382	+				-2.0
2,111,382	+				-0.2
2,111,382	+				-0.0
2,111,382	+				-1.4
2,111,383	-				-0.4
2,111,383	-				+0.3