Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01940

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
2,022,113	-		MPMX19_01939	0.43	-0.4
2,022,202	+		MPMX19_01939	0.49	-0.7
2,022,281	-		MPMX19_01939	0.54	-1.0
2,022,331	+		MPMX19_01939	0.57	-0.4
2,022,331	+		MPMX19_01939	0.57	-1.0
2,022,332	-		MPMX19_01939	0.57	+0.0
2,022,332	-		MPMX19_01939	0.57	+0.2
2,022,332	-		MPMX19_01939	0.57	+1.6
2,022,397	+		MPMX19_01939	0.61	+0.0
2,022,397	+		MPMX19_01939	0.61	-0.2
2,022,398	-		MPMX19_01939	0.61	+0.0
2,022,443	-		MPMX19_01939	0.64	-0.5
2,022,446	-		MPMX19_01939	0.64	+0.7
2,022,614	+		MPMX19_01939	0.75	-1.0
2,023,017	+				-0.2
2,023,017	+				-0.4
2,023,017	+				-1.7
2,023,018	-				+0.7
2,023,018	-				-0.4
2,023,018	-				-0.5
2,023,018	-				+0.5
2,023,113	+				-1.4
2,023,113	+				+0.0
2,023,114	-				-0.2
2,023,146	+		MPMX19_01940	0.10	-1.6
2,023,146	+		MPMX19_01940	0.10	-0.8
2,023,147	-		MPMX19_01940	0.10	+0.8
2,023,147	-		MPMX19_01940	0.10	+0.0
2,023,147	-		MPMX19_01940	0.10	+0.2
2,023,147	-		MPMX19_01940	0.10	-0.4
2,023,147	-		MPMX19_01940	0.10	+0.3
2,023,491	+		MPMX19_01940	0.85	-0.3
2,023,491	+		MPMX19_01940	0.85	+1.3
2,023,491	+		MPMX19_01940	0.85	+0.0
2,023,491	+		MPMX19_01940	0.85	-0.3
2,023,491	+		MPMX19_01940	0.85	+0.6
2,023,491	+		MPMX19_01940	0.85	+0.2
2,023,491	+		MPMX19_01940	0.85	+0.4
2,023,491	+		MPMX19_01940	0.85	-1.4
2,023,491	+		MPMX19_01940	0.85	-0.5
2,023,491	+		MPMX19_01940	0.85	-1.0
2,023,491	+		MPMX19_01940	0.85	-1.2
2,023,491	+		MPMX19_01940	0.85	-0.4
2,023,491	+		MPMX19_01940	0.85	+0.3
2,023,492	-		MPMX19_01940	0.85	-0.1
2,023,492	-		MPMX19_01940	0.85	-0.4
2,023,492	-		MPMX19_01940	0.85	-0.1
2,023,492	-		MPMX19_01940	0.85	-0.4
2,023,492	-		MPMX19_01940	0.85	-1.9
2,023,492	-		MPMX19_01940	0.85	-0.1
2,023,492	-		MPMX19_01940	0.85	-1.0
2,023,492	-		MPMX19_01940	0.85	+0.2
2,023,492	-		MPMX19_01940	0.85	+0.0
2,023,492	-		MPMX19_01940	0.85	+0.4
2,023,492	-		MPMX19_01940	0.85	-0.7
2,023,651	+		MPMX19_01941	0.23	-2.0
2,023,651	+		MPMX19_01941	0.23	-0.5
2,023,651	+		MPMX19_01941	0.23	-0.3
2,023,651	+		MPMX19_01941	0.23	+0.3
2,023,651	+		MPMX19_01941	0.23	+0.4
2,023,651	+		MPMX19_01941	0.23	+0.0
2,023,651	+		MPMX19_01941	0.23	-0.1
2,023,651	+		MPMX19_01941	0.23	+1.6
2,023,651	+		MPMX19_01941	0.23	+0.6
2,023,651	+		MPMX19_01941	0.23	-0.6
2,023,651	+		MPMX19_01941	0.23	-0.7
2,023,651	+		MPMX19_01941	0.23	-0.1
2,023,651	+		MPMX19_01941	0.23	-0.8
2,023,651	+		MPMX19_01941	0.23	+1.3
2,023,651	+		MPMX19_01941	0.23	-0.4
2,023,651	+		MPMX19_01941	0.23	-2.3
2,023,651	+		MPMX19_01941	0.23	-1.0
2,023,651	+		MPMX19_01941	0.23	-0.8
2,023,651	+		MPMX19_01941	0.23	+0.8
2,023,651	+		MPMX19_01941	0.23	+0.6
2,023,651	+		MPMX19_01941	0.23	+0.4
2,023,651	+		MPMX19_01941	0.23	-2.2
2,023,651	+		MPMX19_01941	0.23	-1.0
2,023,652	-		MPMX19_01941	0.23	-0.6
2,023,652	-		MPMX19_01941	0.23	-1.7
2,023,652	-		MPMX19_01941	0.23	+0.1
2,023,652	-		MPMX19_01941	0.23	-0.1
2,023,652	-		MPMX19_01941	0.23	-2.0
2,023,652	-		MPMX19_01941	0.23	-1.2
2,023,652	-		MPMX19_01941	0.23	-1.2
2,023,652	-		MPMX19_01941	0.23	-0.2
2,023,652	-		MPMX19_01941	0.23	-1.9
2,023,652	-		MPMX19_01941	0.23	-0.5
2,023,652	-		MPMX19_01941	0.23	-1.7
2,023,652	-		MPMX19_01941	0.23	+0.6
2,023,652	-		MPMX19_01941	0.23	+0.2
2,023,652	-		MPMX19_01941	0.23	-0.4
2,023,652	-		MPMX19_01941	0.23	+0.7
2,023,803	-		MPMX19_01941	0.74	-2.2
2,023,803	-		MPMX19_01941	0.74	+1.0
2,023,837	+		MPMX19_01941	0.85	+0.3
2,023,837	+		MPMX19_01941	0.85	+0.8
2,023,837	+		MPMX19_01941	0.85	-0.9
2,023,837	+		MPMX19_01941	0.85	-0.4
2,023,837	+		MPMX19_01941	0.85	+0.1
2,023,837	+		MPMX19_01941	0.85	+1.2
2,023,837	+		MPMX19_01941	0.85	-1.1
2,023,837	+		MPMX19_01941	0.85	-1.2
2,023,837	+		MPMX19_01941	0.85	-0.2
2,023,837	+		MPMX19_01941	0.85	-0.6
2,023,837	+		MPMX19_01941	0.85	-0.2
2,023,837	+		MPMX19_01941	0.85	-2.3
2,023,838	-		MPMX19_01941	0.86	-0.8
2,023,838	-		MPMX19_01941	0.86	-0.1
2,023,838	-		MPMX19_01941	0.86	-0.8
2,023,838	-		MPMX19_01941	0.86	-0.5
2,023,838	-		MPMX19_01941	0.86	-1.0
2,024,091	+				-0.9
2,024,091	+				+0.8
2,024,091	+				-0.7
2,024,091	+				-0.2
2,024,091	+				+0.2
2,024,092	-				-1.2
2,024,092	-				+0.4
2,024,092	-				-0.7
2,024,092	-				+2.6
2,024,092	-				-0.2
2,024,092	-				-0.3
2,024,092	-				-0.2
2,024,092	-				-1.1
2,024,133	+		MPMX19_01942	0.15	+0.9
2,024,133	+		MPMX19_01942	0.15	+0.1
2,024,134	-		MPMX19_01942	0.15	+0.4
2,024,134	-		MPMX19_01942	0.15	-0.1
2,024,164	+		MPMX19_01942	0.19	-1.0
2,024,164	+		MPMX19_01942	0.19	+0.1
2,024,164	+		MPMX19_01942	0.19	-0.1
2,024,164	+		MPMX19_01942	0.19	-0.6
2,024,164	+		MPMX19_01942	0.19	+1.6
2,024,165	-		MPMX19_01942	0.19	-0.3
2,024,165	-		MPMX19_01942	0.19	-0.2
2,024,203	+		MPMX19_01942	0.25	-0.9
2,024,203	+		MPMX19_01942	0.25	-0.6
2,024,203	+		MPMX19_01942	0.25	-1.0
2,024,203	+		MPMX19_01942	0.25	+0.2
2,024,204	-		MPMX19_01942	0.25	-0.7
2,024,204	-		MPMX19_01942	0.25	+0.6
2,024,204	-		MPMX19_01942	0.25	+0.3
2,024,204	-		MPMX19_01942	0.25	-1.5
2,024,204	-		MPMX19_01942	0.25	+0.8
2,024,204	-		MPMX19_01942	0.25	-0.3
2,024,304	+		MPMX19_01942	0.39	-0.5
2,024,304	+		MPMX19_01942	0.39	-0.1
2,024,304	+		MPMX19_01942	0.39	+0.6
2,024,304	+		MPMX19_01942	0.39	+0.2
2,024,304	+		MPMX19_01942	0.39	-0.3
2,024,304	+		MPMX19_01942	0.39	-2.4
2,024,304	+		MPMX19_01942	0.39	+0.3
2,024,305	-		MPMX19_01942	0.39	+0.0
2,024,305	-		MPMX19_01942	0.39	-0.2
2,024,305	-		MPMX19_01942	0.39	-1.5
2,024,305	-		MPMX19_01942	0.39	-1.4
2,024,348	+		MPMX19_01942	0.45	-1.0
2,024,348	+		MPMX19_01942	0.45	+0.3
2,024,349	-		MPMX19_01942	0.45	-0.1
2,024,349	-		MPMX19_01942	0.45	-1.1
2,024,359	+		MPMX19_01942	0.47	-1.7
2,024,359	+		MPMX19_01942	0.47	+0.0
2,024,359	+		MPMX19_01942	0.47	+0.3
2,024,360	-		MPMX19_01942	0.47	+1.0
2,024,360	-		MPMX19_01942	0.47	-0.6
2,024,360	-		MPMX19_01942	0.47	-2.1
2,024,360	-		MPMX19_01942	0.47	-0.4
2,024,360	-		MPMX19_01942	0.47	-1.7