Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00832

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00831 and MPMX19_00832 are separated by 37 nucleotidesMPMX19_00832 and MPMX19_00833 are separated by 304 nucleotides MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706 _00831 MPMX19_00832: MPMX19_00832 - hypothetical protein, at 863,744 to 864,322 _00832 MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721 _00833 Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1at 863.803 kb on - strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.985 kb on + strand, within MPMX19_00832at 864.003 kb on - strand, within MPMX19_00832at 864.009 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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863,803 - MPMX19_00832 0.10 -0.2
863,877 + MPMX19_00832 0.23 -0.2
863,877 + MPMX19_00832 0.23 -1.7
863,877 + MPMX19_00832 0.23 -1.4
863,877 + MPMX19_00832 0.23 -0.1
863,878 - MPMX19_00832 0.23 -0.4
863,878 - MPMX19_00832 0.23 -0.2
863,878 - MPMX19_00832 0.23 -0.9
863,985 + MPMX19_00832 0.42 +0.4
864,003 - MPMX19_00832 0.45 -0.8
864,009 + MPMX19_00832 0.46 +1.3
864,231 + MPMX19_00832 0.84 -0.9
864,231 + MPMX19_00832 0.84 -2.1
864,231 + MPMX19_00832 0.84 +0.5
864,231 + MPMX19_00832 0.84 +0.3
864,232 - MPMX19_00832 0.84 -1.9
864,232 - MPMX19_00832 0.84 -0.7
864,232 - MPMX19_00832 0.84 +1.2
864,232 - MPMX19_00832 0.84 +0.9
864,232 - MPMX19_00832 0.84 -2.2
864,232 - MPMX19_00832 0.84 -0.2
864,417 + -0.7
864,417 + -1.5
864,417 + +0.2
864,417 + +0.5
864,417 + -0.2
864,418 - +1.2
864,418 - +0.2
864,418 - +0.1
864,418 - +0.1
864,508 + -0.7
864,508 + -1.7
864,508 + -0.1
864,508 + +0.1
864,508 + -0.8
864,630 + -0.2
864,630 + -0.4
864,630 + -1.8
864,630 + -1.1

Or see this region's nucleotide sequence