Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00101

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
106,687	+		MPMX19_00099	0.27	-1.4
106,688	-		MPMX19_00099	0.27	-0.2
106,688	-		MPMX19_00099	0.27	+1.3
107,025	-				-2.2
107,075	+				-1.6
107,075	+				-0.4
107,076	-				+0.4
107,076	-				+0.3
107,076	-				+1.6
107,103	+				-1.7
107,103	+				-0.7
107,103	+				-0.6
107,103	+				-0.2
107,104	-				-1.3
107,232	+		MPMX19_00100	0.37	-1.1
107,232	+		MPMX19_00100	0.37	-1.4
107,232	+		MPMX19_00100	0.37	-0.4
107,233	-		MPMX19_00100	0.37	+0.7
107,310	+		MPMX19_00100	0.68	-0.9
107,310	+		MPMX19_00100	0.68	-1.0
107,310	+		MPMX19_00100	0.68	-1.6
107,310	+		MPMX19_00100	0.68	-1.2
107,310	+		MPMX19_00100	0.68	-1.2
107,310	+		MPMX19_00100	0.68	-0.7
107,310	+		MPMX19_00100	0.68	+0.5
107,311	-		MPMX19_00100	0.69	-0.4
107,311	-		MPMX19_00100	0.69	-0.6
107,311	-		MPMX19_00100	0.69	-0.9
107,311	-		MPMX19_00100	0.69	-2.4
107,311	-		MPMX19_00100	0.69	+1.2
107,311	-		MPMX19_00100	0.69	+0.1
107,607	+				-1.4
107,607	+				-0.8
107,712	+		MPMX19_00101	0.12	+0.3
107,712	+		MPMX19_00101	0.12	-0.5
107,712	+		MPMX19_00101	0.12	-0.8
107,712	+		MPMX19_00101	0.12	-0.2
107,712	+		MPMX19_00101	0.12	-0.4
107,712	+		MPMX19_00101	0.12	-0.9
107,712	+		MPMX19_00101	0.12	+0.2
107,712	+		MPMX19_00101	0.12	+0.1
107,712	+		MPMX19_00101	0.12	-1.4
107,713	-		MPMX19_00101	0.12	-1.1
107,713	-		MPMX19_00101	0.12	-0.2
107,713	-		MPMX19_00101	0.12	-0.9
107,713	-		MPMX19_00101	0.12	+0.3
107,928	+		MPMX19_00101	0.29	+1.1
107,928	+		MPMX19_00101	0.29	+0.3
107,928	+		MPMX19_00101	0.29	+0.7
107,928	+		MPMX19_00101	0.29	+1.4
107,928	+		MPMX19_00101	0.29	-1.2
107,928	+		MPMX19_00101	0.29	-1.2
107,929	-		MPMX19_00101	0.29	+0.3
107,929	-		MPMX19_00101	0.29	-0.7
107,929	-		MPMX19_00101	0.29	-0.5
107,929	-		MPMX19_00101	0.29	-1.8
107,929	-		MPMX19_00101	0.29	-0.7
107,929	-		MPMX19_00101	0.29	-0.7
108,007	-		MPMX19_00101	0.36	-0.8
108,007	-		MPMX19_00101	0.36	-2.4
108,007	-		MPMX19_00101	0.36	-3.2
108,007	-		MPMX19_00101	0.36	+1.1
108,007	-		MPMX19_00101	0.36	-0.7
108,007	-		MPMX19_00101	0.36	-0.2
108,007	-		MPMX19_00101	0.36	+0.1
108,007	-		MPMX19_00101	0.36	-0.2
108,007	-		MPMX19_00101	0.36	-0.4
108,007	-		MPMX19_00101	0.36	-0.2
108,007	-		MPMX19_00101	0.36	+0.9
108,007	-		MPMX19_00101	0.36	+1.0
108,007	-		MPMX19_00101	0.36	+1.1
108,007	-		MPMX19_00101	0.36	-0.1
108,007	-		MPMX19_00101	0.36	-1.0
108,007	-		MPMX19_00101	0.36	+0.2
108,007	-		MPMX19_00101	0.36	-1.1
108,007	-		MPMX19_00101	0.36	-1.4
108,007	-		MPMX19_00101	0.36	-0.5
108,007	-		MPMX19_00101	0.36	-0.8
108,007	-		MPMX19_00101	0.36	-0.0
108,007	-		MPMX19_00101	0.36	-1.5
108,007	-		MPMX19_00101	0.36	-0.8
108,013	-		MPMX19_00101	0.36	-0.6
108,013	-		MPMX19_00101	0.36	+0.9
108,013	-		MPMX19_00101	0.36	-1.3
108,013	-		MPMX19_00101	0.36	+0.6
108,013	-		MPMX19_00101	0.36	-0.1
108,013	-		MPMX19_00101	0.36	-0.7
108,013	-		MPMX19_00101	0.36	-2.3
108,013	-		MPMX19_00101	0.36	-0.7
108,013	-		MPMX19_00101	0.36	-0.4
108,013	-		MPMX19_00101	0.36	-0.2
108,123	+		MPMX19_00101	0.45	-0.3
108,132	+		MPMX19_00101	0.46	-0.8
108,133	-		MPMX19_00101	0.46	-0.8
108,133	-		MPMX19_00101	0.46	-0.5
108,133	-		MPMX19_00101	0.46	+1.2
108,145	-		MPMX19_00101	0.47	-0.2
108,396	+		MPMX19_00101	0.67	-0.9
108,396	+		MPMX19_00101	0.67	-0.5
108,396	+		MPMX19_00101	0.67	+0.3
108,396	+		MPMX19_00101	0.67	-0.8
108,396	+		MPMX19_00101	0.67	-1.5
108,396	+		MPMX19_00101	0.67	-1.5
108,396	+		MPMX19_00101	0.67	+0.4
108,397	-		MPMX19_00101	0.67	-1.7
108,397	-		MPMX19_00101	0.67	-0.4
108,397	-		MPMX19_00101	0.67	-0.1
108,397	-		MPMX19_00101	0.67	+0.3
108,397	-		MPMX19_00101	0.67	+0.2
108,414	+		MPMX19_00101	0.68	-0.7
108,414	+		MPMX19_00101	0.68	-1.5
108,414	+		MPMX19_00101	0.68	-0.2
108,415	-		MPMX19_00101	0.68	+1.3
108,415	-		MPMX19_00101	0.68	-1.8
108,631	+		MPMX19_00101	0.86	-1.9
108,631	+		MPMX19_00101	0.86	-0.5
108,631	+		MPMX19_00101	0.86	-1.2
108,631	+		MPMX19_00101	0.86	+0.2
108,632	-		MPMX19_00101	0.86	+0.3
108,632	-		MPMX19_00101	0.86	+1.3
108,632	-		MPMX19_00101	0.86	-0.0
108,632	-		MPMX19_00101	0.86	+0.1
108,632	-		MPMX19_00101	0.86	-0.4
108,632	-		MPMX19_00101	0.86	-1.4
108,632	-		MPMX19_00101	0.86	-1.5
108,636	+		MPMX19_00101	0.86	-0.7
108,636	+		MPMX19_00101	0.86	-1.7
108,636	+		MPMX19_00101	0.86	-1.4
108,636	+		MPMX19_00101	0.86	+0.6
108,636	+		MPMX19_00101	0.86	-1.4
108,637	-		MPMX19_00101	0.86	-0.9
108,637	-		MPMX19_00101	0.86	-0.1
108,637	-		MPMX19_00101	0.86	-1.5
108,637	-		MPMX19_00101	0.86	-0.9
108,637	-		MPMX19_00101	0.86	-1.8
108,787	+				-2.0
108,787	+				-0.4
108,787	+				+0.4
108,787	+				-0.4
108,787	+				-1.3
108,788	-				+0.3
108,788	-				-1.1
108,788	-				-0.4
108,788	-				-0.5
108,788	-				-0.4
108,788	-				-0.6
108,788	-				-0.9
108,828	+				-2.1
108,828	+				-1.1
108,828	+				-0.2
108,828	+				-0.5
108,829	-				-0.9
108,829	-				-0.4
108,829	-				-1.9
108,829	-				-0.9
108,829	-				+0.2
108,829	-				-0.1
108,829	-				+0.2
108,829	-				+0.3
108,829	-				+0.1
109,143	-		MPMX19_00102	0.47	-1.2
109,499	-				-0.3
109,499	-				-0.9
109,687	+				-0.4
109,687	+				+0.1
109,689	+				+0.6