Strain Fitness in Methylophilus sp. DMC18 around GFF682

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF680 and GFF681 are separated by 0 nucleotidesGFF681 and GFF682 are separated by 61 nucleotidesGFF682 and GFF683 are separated by 38 nucleotides GFF680 - hypothetical protein, at 757,467 to 758,363 GFF680 GFF681 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 758,364 to 759,233 GFF681 GFF682 - Putative pterin-4-alpha-carbinolamine dehydratase, at 759,295 to 759,669 GFF682 GFF683 - tRNA dimethylallyltransferase, at 759,708 to 760,661 GFF683 Position (kb) 759 760Strain fitness (log2 ratio) -2 -1 0 1at 758.300 kb on + strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.304 kb on - strandat 758.357 kb on + strandat 758.357 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.397 kb on + strandat 758.397 kb on + strandat 758.450 kb on + strandat 758.564 kb on + strand, within GFF681at 758.564 kb on + strand, within GFF681at 758.564 kb on + strand, within GFF681at 758.565 kb on - strand, within GFF681at 758.565 kb on - strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.610 kb on - strand, within GFF681at 758.664 kb on + strand, within GFF681at 758.665 kb on - strand, within GFF681at 758.739 kb on + strand, within GFF681at 758.739 kb on + strand, within GFF681at 758.740 kb on - strand, within GFF681at 758.816 kb on + strand, within GFF681at 758.816 kb on + strand, within GFF681at 758.817 kb on - strand, within GFF681at 758.817 kb on - strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.883 kb on + strand, within GFF681at 758.883 kb on + strand, within GFF681at 758.884 kb on - strand, within GFF681at 758.884 kb on - strand, within GFF681at 758.916 kb on + strand, within GFF681at 758.916 kb on + strand, within GFF681at 758.971 kb on - strand, within GFF681at 758.971 kb on - strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.010 kb on + strand, within GFF681at 759.066 kb on + strand, within GFF681at 759.066 kb on + strand, within GFF681at 759.067 kb on - strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.086 kb on - strand, within GFF681at 759.089 kb on + strand, within GFF681at 759.089 kb on + strand, within GFF681at 759.095 kb on + strand, within GFF681at 759.102 kb on + strand, within GFF681at 759.151 kb on + strandat 759.152 kb on - strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.230 kb on - strandat 759.231 kb on + strandat 759.231 kb on + strandat 759.232 kb on - strandat 759.232 kb on - strandat 759.254 kb on - strandat 759.254 kb on - strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.256 kb on - strandat 759.256 kb on - strandat 759.294 kb on + strandat 759.308 kb on + strandat 759.308 kb on + strandat 759.308 kb on + strandat 759.309 kb on - strandat 759.309 kb on - strandat 759.309 kb on - strandat 759.342 kb on + strand, within GFF682at 759.361 kb on + strand, within GFF682at 759.364 kb on + strand, within GFF682at 759.364 kb on + strand, within GFF682at 759.364 kb on + strand, within GFF682at 759.365 kb on - strand, within GFF682at 759.380 kb on + strand, within GFF682at 759.380 kb on + strand, within GFF682at 759.381 kb on - strand, within GFF682at 759.381 kb on - strand, within GFF682at 759.381 kb on - strand, within GFF682at 759.381 kb on - strand, within GFF682at 759.387 kb on + strand, within GFF682at 759.387 kb on + strand, within GFF682at 759.391 kb on + strand, within GFF682at 759.391 kb on + strand, within GFF682at 759.394 kb on - strand, within GFF682at 759.447 kb on - strand, within GFF682at 759.487 kb on + strand, within GFF682at 759.487 kb on + strand, within GFF682at 759.531 kb on + strand, within GFF682at 759.547 kb on - strand, within GFF682at 759.547 kb on - strand, within GFF682at 759.548 kb on + strand, within GFF682at 759.548 kb on + strand, within GFF682at 759.548 kb on + strand, within GFF682at 759.548 kb on + strand, within GFF682at 759.549 kb on - strand, within GFF682at 759.549 kb on - strand, within GFF682at 759.645 kb on + strandat 759.646 kb on - strandat 759.650 kb on - strandat 759.659 kb on - strandat 759.659 kb on - strandat 759.667 kb on + strandat 759.667 kb on + strandat 759.668 kb on - strandat 759.678 kb on - strandat 759.683 kb on + strandat 759.707 kb on + strandat 759.707 kb on + strandat 759.707 kb on + strandat 759.708 kb on - strandat 759.734 kb on - strandat 759.797 kb on - strandat 759.873 kb on - strand, within GFF683at 759.913 kb on + strand, within GFF683at 759.922 kb on + strand, within GFF683at 759.922 kb on + strand, within GFF683at 760.039 kb on - strand, within GFF683at 760.162 kb on + strand, within GFF683at 760.162 kb on + strand, within GFF683at 760.162 kb on + strand, within GFF683at 760.163 kb on - strand, within GFF683at 760.163 kb on - strand, within GFF683at 760.163 kb on - strand, within GFF683at 760.163 kb on - strand, within GFF683at 760.230 kb on + strand, within GFF683at 760.388 kb on + strand, within GFF683at 760.419 kb on + strand, within GFF683at 760.530 kb on + strand, within GFF683at 760.531 kb on - strand, within GFF683at 760.570 kb on + strandat 760.571 kb on - strandat 760.577 kb on + strandat 760.588 kb on + strandat 760.588 kb on + strandat 760.588 kb on + strandat 760.589 kb on - strandat 760.589 kb on - strandat 760.597 kb on + strandat 760.597 kb on + strandat 760.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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758,300 + -1.1
758,301 - +1.4
758,301 - -2.4
758,301 - -0.1
758,301 - -0.7
758,304 - -1.9
758,357 + -1.8
758,357 + -0.9
758,361 + -0.7
758,361 + -1.1
758,361 + -1.7
758,361 + -0.0
758,397 + +0.3
758,397 + -0.1
758,450 + -0.1
758,564 + GFF681 0.23 -0.5
758,564 + GFF681 0.23 -1.1
758,564 + GFF681 0.23 -0.9
758,565 - GFF681 0.23 -1.1
758,565 - GFF681 0.23 +0.2
758,589 + GFF681 0.26 +0.2
758,589 + GFF681 0.26 -0.4
758,589 + GFF681 0.26 -1.2
758,589 + GFF681 0.26 -2.5
758,610 - GFF681 0.28 -0.7
758,664 + GFF681 0.34 -0.8
758,665 - GFF681 0.35 -1.3
758,739 + GFF681 0.43 -0.5
758,739 + GFF681 0.43 -0.2
758,740 - GFF681 0.43 -2.0
758,816 + GFF681 0.52 -0.5
758,816 + GFF681 0.52 -1.9
758,817 - GFF681 0.52 -0.8
758,817 - GFF681 0.52 -0.7
758,871 + GFF681 0.58 +0.1
758,871 + GFF681 0.58 -0.4
758,871 + GFF681 0.58 -0.2
758,871 + GFF681 0.58 +0.2
758,871 + GFF681 0.58 +0.0
758,872 - GFF681 0.58 +0.8
758,872 - GFF681 0.58 -0.7
758,872 - GFF681 0.58 -2.1
758,883 + GFF681 0.60 +0.2
758,883 + GFF681 0.60 -0.4
758,884 - GFF681 0.60 +0.2
758,884 - GFF681 0.60 -1.7
758,916 + GFF681 0.63 +0.9
758,916 + GFF681 0.63 +0.3
758,971 - GFF681 0.70 -0.1
758,971 - GFF681 0.70 +0.9
759,005 + GFF681 0.74 -1.4
759,005 + GFF681 0.74 +0.3
759,005 + GFF681 0.74 -0.4
759,005 + GFF681 0.74 -1.4
759,005 + GFF681 0.74 -0.1
759,005 + GFF681 0.74 +0.3
759,005 + GFF681 0.74 -0.6
759,005 + GFF681 0.74 +0.4
759,006 - GFF681 0.74 -1.4
759,006 - GFF681 0.74 -0.1
759,006 - GFF681 0.74 -0.2
759,010 + GFF681 0.74 +0.4
759,066 + GFF681 0.81 +0.3
759,066 + GFF681 0.81 -1.3
759,067 - GFF681 0.81 -0.1
759,085 + GFF681 0.83 -0.5
759,085 + GFF681 0.83 +0.2
759,085 + GFF681 0.83 +0.9
759,086 - GFF681 0.83 -1.9
759,089 + GFF681 0.83 -0.6
759,089 + GFF681 0.83 -0.1
759,095 + GFF681 0.84 -0.3
759,102 + GFF681 0.85 -1.5
759,151 + -1.4
759,152 - +0.9
759,229 + -1.1
759,229 + -0.4
759,229 + +0.6
759,229 + +0.1
759,229 + -1.4
759,229 + -1.4
759,230 - -0.5
759,231 + -1.3
759,231 + -0.6
759,232 - -0.1
759,232 - -0.3
759,254 - -0.5
759,254 - -0.3
759,255 + +1.4
759,255 + -0.3
759,255 + -0.4
759,255 + -1.4
759,256 - +1.4
759,256 - +0.1
759,294 + +1.4
759,308 + -1.3
759,308 + +0.2
759,308 + -1.1
759,309 - -1.7
759,309 - -1.0
759,309 - +0.1
759,342 + GFF682 0.13 +0.3
759,361 + GFF682 0.18 -1.1
759,364 + GFF682 0.18 -0.1
759,364 + GFF682 0.18 -0.1
759,364 + GFF682 0.18 -0.2
759,365 - GFF682 0.19 -2.1
759,380 + GFF682 0.23 -0.7
759,380 + GFF682 0.23 +0.1
759,381 - GFF682 0.23 -0.2
759,381 - GFF682 0.23 -0.7
759,381 - GFF682 0.23 -0.1
759,381 - GFF682 0.23 +0.1
759,387 + GFF682 0.25 -0.7
759,387 + GFF682 0.25 +0.3
759,391 + GFF682 0.26 +0.5
759,391 + GFF682 0.26 -2.4
759,394 - GFF682 0.26 -0.1
759,447 - GFF682 0.41 -1.5
759,487 + GFF682 0.51 -0.6
759,487 + GFF682 0.51 -1.8
759,531 + GFF682 0.63 -0.6
759,547 - GFF682 0.67 -1.5
759,547 - GFF682 0.67 -0.1
759,548 + GFF682 0.67 +0.7
759,548 + GFF682 0.67 -0.1
759,548 + GFF682 0.67 -0.6
759,548 + GFF682 0.67 -1.3
759,549 - GFF682 0.68 -1.1
759,549 - GFF682 0.68 -0.7
759,645 + -1.0
759,646 - -0.5
759,650 - -1.5
759,659 - +0.7
759,659 - +0.0
759,667 + -1.1
759,667 + +0.7
759,668 - -1.1
759,678 - +1.4
759,683 + +0.9
759,707 + +0.0
759,707 + -0.5
759,707 + -0.7
759,708 - +0.2
759,734 - -1.1
759,797 - -2.4
759,873 - GFF683 0.17 -1.5
759,913 + GFF683 0.21 -1.1
759,922 + GFF683 0.22 +0.5
759,922 + GFF683 0.22 -0.7
760,039 - GFF683 0.35 -0.4
760,162 + GFF683 0.48 +0.9
760,162 + GFF683 0.48 -1.7
760,162 + GFF683 0.48 +0.6
760,163 - GFF683 0.48 -0.7
760,163 - GFF683 0.48 -0.5
760,163 - GFF683 0.48 +1.5
760,163 - GFF683 0.48 -2.7
760,230 + GFF683 0.55 -1.0
760,388 + GFF683 0.71 +1.2
760,419 + GFF683 0.75 -0.3
760,530 + GFF683 0.86 -1.2
760,531 - GFF683 0.86 -0.1
760,570 + -1.4
760,571 - +0.5
760,577 + -0.3
760,588 + -0.1
760,588 + -2.5
760,588 + -0.5
760,589 - +0.0
760,589 - +0.4
760,597 + +0.1
760,597 + +0.2
760,597 + +0.5

Or see this region's nucleotide sequence