Strain Fitness in Methylophilus sp. DMC18 around GFF346

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF344 and GFF345 are separated by 129 nucleotidesGFF345 and GFF346 are separated by 46 nucleotidesGFF346 and GFF347 are separated by 60 nucleotides GFF344 - hypothetical protein, at 372,966 to 373,631 GFF344 GFF345 - hypothetical protein, at 373,761 to 374,363 GFF345 GFF346 - putative DNA endonuclease SmrA, at 374,410 to 374,955 GFF346 GFF347 - Thioredoxin reductase, at 375,016 to 375,966 GFF347 Position (kb) 374 375Strain fitness (log2 ratio) -2 -1 0 1at 373.465 kb on + strand, within GFF344at 373.465 kb on + strand, within GFF344at 373.533 kb on - strand, within GFF344at 373.619 kb on + strandat 373.620 kb on - strandat 373.620 kb on - strandat 373.620 kb on - strandat 373.620 kb on - strandat 373.640 kb on + strandat 373.640 kb on + strandat 373.640 kb on + strandat 373.641 kb on - strandat 373.711 kb on + strandat 373.766 kb on + strandat 373.830 kb on + strand, within GFF345at 373.830 kb on + strand, within GFF345at 373.830 kb on + strand, within GFF345at 373.831 kb on - strand, within GFF345at 373.832 kb on + strand, within GFF345at 373.832 kb on + strand, within GFF345at 373.832 kb on + strand, within GFF345at 373.833 kb on - strand, within GFF345at 373.833 kb on - strand, within GFF345at 373.833 kb on - strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.834 kb on + strand, within GFF345at 373.835 kb on - strand, within GFF345at 373.911 kb on + strand, within GFF345at 373.911 kb on + strand, within GFF345at 373.911 kb on + strand, within GFF345at 373.911 kb on + strand, within GFF345at 373.912 kb on - strand, within GFF345at 373.929 kb on + strand, within GFF345at 373.965 kb on - strand, within GFF345at 374.002 kb on + strand, within GFF345at 374.181 kb on + strand, within GFF345at 374.181 kb on + strand, within GFF345at 374.182 kb on - strand, within GFF345at 374.182 kb on - strand, within GFF345at 374.202 kb on + strand, within GFF345at 374.207 kb on + strand, within GFF345at 374.278 kb on + strand, within GFF345at 374.278 kb on + strand, within GFF345at 374.279 kb on - strand, within GFF345at 374.356 kb on - strandat 374.356 kb on - strandat 374.361 kb on + strandat 374.362 kb on - strandat 374.472 kb on - strand, within GFF346at 374.509 kb on + strand, within GFF346at 374.521 kb on - strand, within GFF346at 374.521 kb on - strand, within GFF346at 374.521 kb on - strand, within GFF346at 374.535 kb on + strand, within GFF346at 374.536 kb on - strand, within GFF346at 374.572 kb on + strand, within GFF346at 374.573 kb on - strand, within GFF346at 374.607 kb on + strand, within GFF346at 374.608 kb on - strand, within GFF346at 374.701 kb on + strand, within GFF346at 374.729 kb on - strand, within GFF346at 374.732 kb on + strand, within GFF346at 374.733 kb on - strand, within GFF346at 374.733 kb on - strand, within GFF346at 374.733 kb on - strand, within GFF346at 374.737 kb on + strand, within GFF346at 374.737 kb on + strand, within GFF346at 374.737 kb on + strand, within GFF346at 374.738 kb on - strand, within GFF346at 374.762 kb on + strand, within GFF346at 374.774 kb on + strand, within GFF346at 374.774 kb on + strand, within GFF346at 374.774 kb on + strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.775 kb on - strand, within GFF346at 374.906 kb on + strandat 374.907 kb on - strandat 374.955 kb on + strandat 374.956 kb on - strandat 374.956 kb on - strandat 374.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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373,465 + GFF344 0.75 +1.0
373,465 + GFF344 0.75 +1.3
373,533 - GFF344 0.85 -1.3
373,619 + -0.7
373,620 - -1.4
373,620 - -0.4
373,620 - -1.4
373,620 - -0.7
373,640 + -0.8
373,640 + -0.4
373,640 + +0.5
373,641 - +0.6
373,711 + +1.6
373,766 + +0.4
373,830 + GFF345 0.11 -0.4
373,830 + GFF345 0.11 -1.0
373,830 + GFF345 0.11 -0.0
373,831 - GFF345 0.12 +0.1
373,832 + GFF345 0.12 -0.0
373,832 + GFF345 0.12 -0.6
373,832 + GFF345 0.12 -1.0
373,833 - GFF345 0.12 -1.4
373,833 - GFF345 0.12 -0.5
373,833 - GFF345 0.12 -0.7
373,834 + GFF345 0.12 -0.8
373,834 + GFF345 0.12 -0.7
373,834 + GFF345 0.12 -0.2
373,834 + GFF345 0.12 -0.3
373,834 + GFF345 0.12 +0.6
373,834 + GFF345 0.12 +0.8
373,834 + GFF345 0.12 -0.1
373,835 - GFF345 0.12 +1.2
373,911 + GFF345 0.25 -1.8
373,911 + GFF345 0.25 -0.9
373,911 + GFF345 0.25 -0.6
373,911 + GFF345 0.25 +0.5
373,912 - GFF345 0.25 +0.2
373,929 + GFF345 0.28 -1.4
373,965 - GFF345 0.34 -0.3
374,002 + GFF345 0.40 +0.6
374,181 + GFF345 0.70 +0.6
374,181 + GFF345 0.70 -1.2
374,182 - GFF345 0.70 -0.2
374,182 - GFF345 0.70 -0.5
374,202 + GFF345 0.73 +0.6
374,207 + GFF345 0.74 +0.3
374,278 + GFF345 0.86 -0.7
374,278 + GFF345 0.86 -0.6
374,279 - GFF345 0.86 +0.7
374,356 - -1.0
374,356 - -1.0
374,361 + -0.4
374,362 - -1.1
374,472 - GFF346 0.11 -0.5
374,509 + GFF346 0.18 -2.2
374,521 - GFF346 0.20 +0.5
374,521 - GFF346 0.20 -0.1
374,521 - GFF346 0.20 -0.0
374,535 + GFF346 0.23 -0.6
374,536 - GFF346 0.23 -1.1
374,572 + GFF346 0.30 -1.0
374,573 - GFF346 0.30 -0.6
374,607 + GFF346 0.36 -1.9
374,608 - GFF346 0.36 +0.1
374,701 + GFF346 0.53 -1.4
374,729 - GFF346 0.58 -0.9
374,732 + GFF346 0.59 +0.3
374,733 - GFF346 0.59 +1.3
374,733 - GFF346 0.59 -0.6
374,733 - GFF346 0.59 -0.2
374,737 + GFF346 0.60 -0.4
374,737 + GFF346 0.60 -0.0
374,737 + GFF346 0.60 +1.1
374,738 - GFF346 0.60 -1.4
374,762 + GFF346 0.64 -1.3
374,774 + GFF346 0.67 -1.4
374,774 + GFF346 0.67 -0.6
374,774 + GFF346 0.67 -0.8
374,775 - GFF346 0.67 -1.2
374,775 - GFF346 0.67 +1.0
374,775 - GFF346 0.67 -0.6
374,775 - GFF346 0.67 -2.5
374,775 - GFF346 0.67 +1.0
374,775 - GFF346 0.67 -1.0
374,775 - GFF346 0.67 -0.6
374,775 - GFF346 0.67 -0.4
374,775 - GFF346 0.67 -1.1
374,775 - GFF346 0.67 -1.4
374,775 - GFF346 0.67 -1.3
374,775 - GFF346 0.67 -1.0
374,906 + -0.3
374,907 - -0.6
374,955 + -0.4
374,956 - -0.4
374,956 - -0.7
374,956 - -1.8

Or see this region's nucleotide sequence