Strain Fitness in Methylophilus sp. DMC18 around GFF2173

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2172 and GFF2173 are separated by 65 nucleotidesGFF2173 and GFF2174 are separated by 117 nucleotides GFF2172 - hypothetical protein, at 221,226 to 222,146 GFF2172 GFF2173 - D-amino acid dehydrogenase 1, at 222,212 to 223,483 GFF2173 GFF2174 - Glutathione synthetase, at 223,601 to 224,536 GFF2174 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1at 221.234 kb on + strandat 221.235 kb on - strandat 221.282 kb on + strandat 221.283 kb on - strandat 221.283 kb on - strandat 221.349 kb on + strand, within GFF2172at 221.351 kb on + strand, within GFF2172at 221.351 kb on + strand, within GFF2172at 221.351 kb on + strand, within GFF2172at 221.441 kb on + strand, within GFF2172at 221.441 kb on + strand, within GFF2172at 221.441 kb on + strand, within GFF2172at 221.452 kb on - strand, within GFF2172at 221.492 kb on + strand, within GFF2172at 221.492 kb on + strand, within GFF2172at 221.492 kb on + strand, within GFF2172at 221.530 kb on + strand, within GFF2172at 221.585 kb on + strand, within GFF2172at 221.586 kb on - strand, within GFF2172at 221.609 kb on - strand, within GFF2172at 221.679 kb on + strand, within GFF2172at 221.679 kb on + strand, within GFF2172at 221.680 kb on - strand, within GFF2172at 221.680 kb on - strand, within GFF2172at 221.680 kb on - strand, within GFF2172at 221.680 kb on - strand, within GFF2172at 221.680 kb on - strand, within GFF2172at 221.713 kb on + strand, within GFF2172at 221.714 kb on - strand, within GFF2172at 221.714 kb on - strand, within GFF2172at 221.768 kb on + strand, within GFF2172at 221.769 kb on - strand, within GFF2172at 221.769 kb on - strand, within GFF2172at 221.770 kb on + strand, within GFF2172at 221.770 kb on + strand, within GFF2172at 221.770 kb on + strand, within GFF2172at 221.770 kb on + strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.771 kb on - strand, within GFF2172at 221.778 kb on - strand, within GFF2172at 221.863 kb on - strand, within GFF2172at 221.869 kb on + strand, within GFF2172at 221.870 kb on - strand, within GFF2172at 221.870 kb on - strand, within GFF2172at 221.891 kb on + strand, within GFF2172at 221.891 kb on + strand, within GFF2172at 221.928 kb on - strand, within GFF2172at 221.970 kb on + strand, within GFF2172at 221.970 kb on + strand, within GFF2172at 221.970 kb on + strand, within GFF2172at 221.970 kb on + strand, within GFF2172at 221.970 kb on + strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.971 kb on - strand, within GFF2172at 221.972 kb on + strand, within GFF2172at 221.973 kb on - strand, within GFF2172at 222.067 kb on + strandat 222.067 kb on + strandat 222.068 kb on - strandat 222.137 kb on - strandat 222.137 kb on - strandat 222.137 kb on - strandat 222.144 kb on + strandat 222.144 kb on + strandat 222.144 kb on + strandat 222.144 kb on + strandat 222.144 kb on + strandat 222.145 kb on - strandat 222.145 kb on - strandat 222.145 kb on - strandat 222.145 kb on - strandat 222.145 kb on - strandat 222.272 kb on + strandat 222.467 kb on + strand, within GFF2173at 222.468 kb on - strand, within GFF2173at 222.507 kb on - strand, within GFF2173at 222.579 kb on + strand, within GFF2173at 222.579 kb on + strand, within GFF2173at 222.579 kb on + strand, within GFF2173at 222.580 kb on - strand, within GFF2173at 222.580 kb on - strand, within GFF2173at 222.580 kb on - strand, within GFF2173at 222.645 kb on + strand, within GFF2173at 222.653 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.774 kb on - strand, within GFF2173at 222.804 kb on - strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.813 kb on + strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.874 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.938 kb on + strand, within GFF2173at 222.938 kb on + strand, within GFF2173at 222.939 kb on - strand, within GFF2173at 222.939 kb on - strand, within GFF2173at 222.965 kb on + strand, within GFF2173at 223.016 kb on + strand, within GFF2173at 223.016 kb on + strand, within GFF2173at 223.017 kb on - strand, within GFF2173at 223.024 kb on + strand, within GFF2173at 223.064 kb on + strand, within GFF2173at 223.065 kb on - strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.289 kb on - strand, within GFF2173at 223.289 kb on - strand, within GFF2173at 223.397 kb on + strandat 223.398 kb on - strandat 223.398 kb on - strandat 223.421 kb on + strandat 223.422 kb on - strandat 223.422 kb on - strandat 223.432 kb on - strandat 223.435 kb on - strandat 223.452 kb on - strandat 223.525 kb on + strandat 223.545 kb on - strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.945 kb on + strand, within GFF2174at 223.946 kb on - strand, within GFF2174at 223.947 kb on + strand, within GFF2174at 224.004 kb on + strand, within GFF2174at 224.005 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.169 kb on - strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.248 kb on - strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.256 kb on + strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.263 kb on - strand, within GFF2174at 224.287 kb on + strand, within GFF2174at 224.436 kb on - strand, within GFF2174

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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221,234 + -0.8
221,235 - -0.3
221,282 + -0.6
221,283 - +0.0
221,283 - +0.2
221,349 + GFF2172 0.13 -1.0
221,351 + GFF2172 0.14 +0.5
221,351 + GFF2172 0.14 -0.1
221,351 + GFF2172 0.14 -1.0
221,441 + GFF2172 0.23 -0.5
221,441 + GFF2172 0.23 -0.0
221,441 + GFF2172 0.23 -1.2
221,452 - GFF2172 0.25 -0.5
221,492 + GFF2172 0.29 +0.3
221,492 + GFF2172 0.29 +0.7
221,492 + GFF2172 0.29 -1.0
221,530 + GFF2172 0.33 -0.3
221,585 + GFF2172 0.39 +0.6
221,586 - GFF2172 0.39 -1.0
221,609 - GFF2172 0.42 -1.2
221,679 + GFF2172 0.49 -1.3
221,679 + GFF2172 0.49 -1.5
221,680 - GFF2172 0.49 -0.8
221,680 - GFF2172 0.49 -1.0
221,680 - GFF2172 0.49 -0.5
221,680 - GFF2172 0.49 -1.7
221,680 - GFF2172 0.49 -1.2
221,713 + GFF2172 0.53 -1.5
221,714 - GFF2172 0.53 -0.3
221,714 - GFF2172 0.53 +0.2
221,768 + GFF2172 0.59 -1.3
221,769 - GFF2172 0.59 -0.1
221,769 - GFF2172 0.59 -0.7
221,770 + GFF2172 0.59 -0.8
221,770 + GFF2172 0.59 -2.4
221,770 + GFF2172 0.59 -1.4
221,770 + GFF2172 0.59 -0.8
221,771 - GFF2172 0.59 -0.8
221,771 - GFF2172 0.59 +0.2
221,771 - GFF2172 0.59 -1.0
221,771 - GFF2172 0.59 -0.5
221,771 - GFF2172 0.59 -0.2
221,771 - GFF2172 0.59 -1.0
221,778 - GFF2172 0.60 -1.0
221,863 - GFF2172 0.69 -2.8
221,869 + GFF2172 0.70 +0.2
221,870 - GFF2172 0.70 +0.0
221,870 - GFF2172 0.70 -1.3
221,891 + GFF2172 0.72 +0.2
221,891 + GFF2172 0.72 -1.0
221,928 - GFF2172 0.76 -0.4
221,970 + GFF2172 0.81 -0.2
221,970 + GFF2172 0.81 -0.5
221,970 + GFF2172 0.81 +0.0
221,970 + GFF2172 0.81 -0.4
221,970 + GFF2172 0.81 +0.0
221,971 - GFF2172 0.81 +0.0
221,971 - GFF2172 0.81 -0.5
221,971 - GFF2172 0.81 -0.0
221,971 - GFF2172 0.81 -2.7
221,971 - GFF2172 0.81 -1.8
221,971 - GFF2172 0.81 -0.7
221,972 + GFF2172 0.81 -0.9
221,973 - GFF2172 0.81 -0.5
222,067 + +0.0
222,067 + -0.8
222,068 - +0.5
222,137 - +0.2
222,137 - +0.2
222,137 - +1.0
222,144 + -2.0
222,144 + -1.0
222,144 + -0.5
222,144 + +0.6
222,144 + -0.3
222,145 - +0.6
222,145 - -1.5
222,145 - -0.7
222,145 - -0.3
222,145 - -2.5
222,272 + +0.5
222,467 + GFF2173 0.20 -1.0
222,468 - GFF2173 0.20 -1.0
222,507 - GFF2173 0.23 -1.0
222,579 + GFF2173 0.29 -0.1
222,579 + GFF2173 0.29 -1.3
222,579 + GFF2173 0.29 -0.5
222,580 - GFF2173 0.29 -0.5
222,580 - GFF2173 0.29 +0.5
222,580 - GFF2173 0.29 -1.4
222,645 + GFF2173 0.34 -0.5
222,653 + GFF2173 0.35 -1.0
222,726 + GFF2173 0.40 -1.8
222,726 + GFF2173 0.40 -2.1
222,726 + GFF2173 0.40 -0.5
222,726 + GFF2173 0.40 -2.0
222,726 + GFF2173 0.40 +0.0
222,727 - GFF2173 0.40 -0.5
222,727 - GFF2173 0.40 +0.6
222,727 - GFF2173 0.40 +0.5
222,727 - GFF2173 0.40 -0.3
222,743 + GFF2173 0.42 -0.1
222,743 + GFF2173 0.42 +0.1
222,743 + GFF2173 0.42 -0.4
222,774 - GFF2173 0.44 -1.3
222,804 - GFF2173 0.47 -1.3
222,812 + GFF2173 0.47 -0.3
222,812 + GFF2173 0.47 +1.2
222,812 + GFF2173 0.47 -0.7
222,812 + GFF2173 0.47 -0.6
222,813 + GFF2173 0.47 -1.3
222,813 - GFF2173 0.47 -1.0
222,813 - GFF2173 0.47 +0.4
222,813 - GFF2173 0.47 -1.3
222,813 - GFF2173 0.47 +0.3
222,813 - GFF2173 0.47 -1.0
222,813 - GFF2173 0.47 -1.0
222,874 + GFF2173 0.52 +0.2
222,878 + GFF2173 0.52 -0.7
222,878 + GFF2173 0.52 -1.0
222,878 + GFF2173 0.52 +0.7
222,879 - GFF2173 0.52 +0.0
222,879 - GFF2173 0.52 -0.9
222,879 - GFF2173 0.52 -0.5
222,879 - GFF2173 0.52 -1.4
222,879 - GFF2173 0.52 -1.3
222,879 - GFF2173 0.52 -1.0
222,912 + GFF2173 0.55 -1.4
222,912 + GFF2173 0.55 +0.0
222,912 + GFF2173 0.55 +0.0
222,912 + GFF2173 0.55 -0.1
222,912 + GFF2173 0.55 -0.5
222,913 - GFF2173 0.55 -1.3
222,913 - GFF2173 0.55 -1.5
222,913 - GFF2173 0.55 -1.0
222,938 + GFF2173 0.57 -2.1
222,938 + GFF2173 0.57 -2.0
222,939 - GFF2173 0.57 -0.4
222,939 - GFF2173 0.57 -0.9
222,965 + GFF2173 0.59 -1.2
223,016 + GFF2173 0.63 -1.0
223,016 + GFF2173 0.63 -0.3
223,017 - GFF2173 0.63 -1.1
223,024 + GFF2173 0.64 -1.3
223,064 + GFF2173 0.67 +0.0
223,065 - GFF2173 0.67 -0.0
223,070 + GFF2173 0.67 -0.7
223,070 + GFF2173 0.67 +0.0
223,070 + GFF2173 0.67 +0.5
223,071 - GFF2173 0.68 -2.0
223,071 - GFF2173 0.68 -1.0
223,071 - GFF2173 0.68 -1.3
223,071 - GFF2173 0.68 -0.3
223,288 + GFF2173 0.85 -0.5
223,288 + GFF2173 0.85 -0.8
223,288 + GFF2173 0.85 -1.0
223,289 - GFF2173 0.85 +0.0
223,289 - GFF2173 0.85 +0.0
223,397 + +0.0
223,398 - +0.3
223,398 - -2.2
223,421 + -0.3
223,422 - -0.3
223,422 - +0.5
223,432 - -1.0
223,435 - +0.0
223,452 - -0.1
223,525 + -2.1
223,545 - -0.8
223,572 + -1.1
223,572 + -0.3
223,572 + +1.4
223,572 + -1.4
223,573 - -1.0
223,573 - +0.6
223,573 - +0.4
223,573 - -1.5
223,573 - -1.1
223,945 + GFF2174 0.37 -1.3
223,946 - GFF2174 0.37 -0.5
223,947 + GFF2174 0.37 -1.2
224,004 + GFF2174 0.43 +0.6
224,005 - GFF2174 0.43 -0.8
224,009 - GFF2174 0.44 -1.8
224,009 - GFF2174 0.44 -2.8
224,169 - GFF2174 0.61 +0.0
224,247 + GFF2174 0.69 +0.0
224,247 + GFF2174 0.69 -1.0
224,247 + GFF2174 0.69 -2.4
224,247 + GFF2174 0.69 -1.0
224,248 - GFF2174 0.69 -2.0
224,254 + GFF2174 0.70 -1.3
224,254 + GFF2174 0.70 -1.8
224,254 + GFF2174 0.70 +0.0
224,254 + GFF2174 0.70 -0.5
224,255 - GFF2174 0.70 -1.0
224,255 - GFF2174 0.70 -1.3
224,255 - GFF2174 0.70 +0.0
224,255 - GFF2174 0.70 -0.1
224,255 - GFF2174 0.70 +0.0
224,255 - GFF2174 0.70 -0.1
224,256 + GFF2174 0.70 +1.3
224,257 - GFF2174 0.70 -1.8
224,257 - GFF2174 0.70 -1.3
224,263 - GFF2174 0.71 -1.0
224,287 + GFF2174 0.73 -0.8
224,436 - GFF2174 0.89 -0.7

Or see this region's nucleotide sequence