Strain Fitness in Methylophilus sp. DMC18 around GFF184

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF182 and GFF183 are separated by 69 nucleotidesGFF183 and GFF184 are separated by 18 nucleotidesGFF184 and GFF185 are separated by 5 nucleotidesGFF185 and GFF186 are separated by 14 nucleotides GFF182 - hypothetical protein, at 179,649 to 182,069 GFF182 GFF183 - Chemotaxis protein CheW, at 182,139 to 182,684 GFF183 GFF184 - Chemotaxis protein methyltransferase, at 182,703 to 183,518 GFF184 GFF185 - Chemoreceptor glutamine deamidase CheD, at 183,524 to 184,063 GFF185 GFF186 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 184,078 to 185,151 GFF186 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1at 181.723 kb on + strand, within GFF182at 181.795 kb on + strand, within GFF182at 181.795 kb on + strand, within GFF182at 181.796 kb on - strand, within GFF182at 181.902 kb on - strandat 181.967 kb on + strandat 182.005 kb on + strandat 182.006 kb on - strandat 182.068 kb on - strandat 182.068 kb on - strandat 182.085 kb on + strandat 182.085 kb on + strandat 182.085 kb on + strandat 182.085 kb on + strandat 182.085 kb on + strandat 182.086 kb on - strandat 182.086 kb on - strandat 182.133 kb on - strandat 182.180 kb on - strandat 182.180 kb on - strandat 182.209 kb on - strand, within GFF183at 182.315 kb on + strand, within GFF183at 182.315 kb on + strand, within GFF183at 182.316 kb on - strand, within GFF183at 182.405 kb on + strand, within GFF183at 182.405 kb on + strand, within GFF183at 182.414 kb on + strand, within GFF183at 182.415 kb on - strand, within GFF183at 182.415 kb on - strand, within GFF183at 182.415 kb on - strand, within GFF183at 182.575 kb on + strand, within GFF183at 182.576 kb on - strand, within GFF183at 182.582 kb on + strand, within GFF183at 182.583 kb on - strand, within GFF183at 182.597 kb on - strand, within GFF183at 182.606 kb on + strand, within GFF183at 182.607 kb on - strand, within GFF183at 182.614 kb on + strand, within GFF183at 182.614 kb on + strand, within GFF183at 182.615 kb on - strand, within GFF183at 182.682 kb on + strandat 182.682 kb on + strandat 182.683 kb on - strandat 182.683 kb on - strandat 182.686 kb on + strandat 182.686 kb on + strandat 182.686 kb on + strandat 182.686 kb on + strandat 182.728 kb on + strandat 182.729 kb on - strandat 182.747 kb on + strandat 182.748 kb on - strandat 182.756 kb on + strandat 182.756 kb on + strandat 182.862 kb on + strand, within GFF184at 182.862 kb on + strand, within GFF184at 182.865 kb on + strand, within GFF184at 182.866 kb on - strand, within GFF184at 183.000 kb on - strand, within GFF184at 183.059 kb on + strand, within GFF184at 183.059 kb on + strand, within GFF184at 183.124 kb on + strand, within GFF184at 183.162 kb on + strand, within GFF184at 183.163 kb on - strand, within GFF184at 183.199 kb on - strand, within GFF184at 183.199 kb on - strand, within GFF184at 183.199 kb on - strand, within GFF184at 183.211 kb on - strand, within GFF184at 183.211 kb on - strand, within GFF184at 183.211 kb on - strand, within GFF184at 183.360 kb on + strand, within GFF184at 183.361 kb on - strand, within GFF184at 183.361 kb on - strand, within GFF184at 183.427 kb on - strand, within GFF184at 183.427 kb on - strand, within GFF184at 183.427 kb on - strand, within GFF184at 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.494 kb on + strandat 183.495 kb on - strandat 183.495 kb on - strandat 183.495 kb on - strandat 183.495 kb on - strandat 183.498 kb on + strandat 183.513 kb on - strandat 183.516 kb on + strandat 183.516 kb on + strandat 183.516 kb on + strandat 183.517 kb on - strandat 183.517 kb on - strandat 183.517 kb on - strandat 183.517 kb on - strandat 183.517 kb on - strandat 183.523 kb on + strandat 183.523 kb on + strandat 183.649 kb on + strand, within GFF185at 183.649 kb on + strand, within GFF185at 183.650 kb on - strand, within GFF185at 183.650 kb on - strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.785 kb on + strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.786 kb on - strand, within GFF185at 183.864 kb on + strand, within GFF185at 183.864 kb on + strand, within GFF185at 183.864 kb on + strand, within GFF185at 183.865 kb on - strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.880 kb on + strand, within GFF185at 183.881 kb on - strand, within GFF185at 183.916 kb on + strand, within GFF185at 183.989 kb on + strand, within GFF185at 184.010 kb on + strandat 184.010 kb on + strandat 184.010 kb on + strandat 184.011 kb on - strandat 184.011 kb on - strandat 184.011 kb on - strandat 184.012 kb on + strandat 184.013 kb on - strandat 184.015 kb on + strandat 184.015 kb on + strandat 184.015 kb on + strandat 184.016 kb on - strandat 184.073 kb on + strandat 184.073 kb on + strandat 184.073 kb on + strandat 184.073 kb on + strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.207 kb on - strand, within GFF186at 184.207 kb on - strand, within GFF186at 184.207 kb on - strand, within GFF186at 184.317 kb on + strand, within GFF186at 184.317 kb on + strand, within GFF186at 184.317 kb on + strand, within GFF186at 184.317 kb on + strand, within GFF186at 184.318 kb on - strand, within GFF186at 184.318 kb on - strand, within GFF186at 184.402 kb on - strand, within GFF186at 184.447 kb on - strand, within GFF186at 184.447 kb on - strand, within GFF186

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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181,723 + GFF182 0.86 -1.2
181,795 + GFF182 0.89 -0.2
181,795 + GFF182 0.89 -0.1
181,796 - GFF182 0.89 -0.4
181,902 - +0.0
181,967 + +0.1
182,005 + -0.7
182,006 - +0.0
182,068 - -1.3
182,068 - -1.3
182,085 + -1.0
182,085 + -1.0
182,085 + +0.6
182,085 + -0.1
182,085 + -0.6
182,086 - -1.0
182,086 - -2.2
182,133 - +1.2
182,180 - +0.3
182,180 - -0.2
182,209 - GFF183 0.13 +0.7
182,315 + GFF183 0.32 -0.5
182,315 + GFF183 0.32 +0.0
182,316 - GFF183 0.32 +0.6
182,405 + GFF183 0.49 +0.3
182,405 + GFF183 0.49 +0.4
182,414 + GFF183 0.50 -0.8
182,415 - GFF183 0.51 -0.8
182,415 - GFF183 0.51 -1.0
182,415 - GFF183 0.51 -1.6
182,575 + GFF183 0.80 +0.3
182,576 - GFF183 0.80 +0.0
182,582 + GFF183 0.81 -0.4
182,583 - GFF183 0.81 -0.2
182,597 - GFF183 0.84 -1.3
182,606 + GFF183 0.86 +0.1
182,607 - GFF183 0.86 +0.6
182,614 + GFF183 0.87 -1.6
182,614 + GFF183 0.87 +0.3
182,615 - GFF183 0.87 -0.5
182,682 + +0.0
182,682 + +0.0
182,683 - -0.3
182,683 - -0.2
182,686 + -0.4
182,686 + -0.4
182,686 + +0.6
182,686 + -0.1
182,728 + -0.9
182,729 - +1.0
182,747 + -0.6
182,748 - -0.6
182,756 + -1.0
182,756 + -0.6
182,862 + GFF184 0.19 -0.5
182,862 + GFF184 0.19 +1.3
182,865 + GFF184 0.20 -1.6
182,866 - GFF184 0.20 -1.9
183,000 - GFF184 0.36 -1.3
183,059 + GFF184 0.44 -0.6
183,059 + GFF184 0.44 -1.0
183,124 + GFF184 0.52 +0.3
183,162 + GFF184 0.56 -0.3
183,163 - GFF184 0.56 -0.6
183,199 - GFF184 0.61 -0.6
183,199 - GFF184 0.61 -0.4
183,199 - GFF184 0.61 -1.2
183,211 - GFF184 0.62 +0.0
183,211 - GFF184 0.62 -0.6
183,211 - GFF184 0.62 -0.5
183,360 + GFF184 0.81 -1.0
183,361 - GFF184 0.81 +0.4
183,361 - GFF184 0.81 +0.3
183,427 - GFF184 0.89 -2.0
183,427 - GFF184 0.89 -1.8
183,427 - GFF184 0.89 +0.3
183,494 + -0.4
183,494 + -0.8
183,494 + -0.6
183,494 + -0.7
183,494 + +0.2
183,494 + -0.8
183,494 + -1.0
183,494 + -0.5
183,495 - -0.2
183,495 - -1.0
183,495 - -0.4
183,495 - +0.5
183,498 + -1.5
183,513 - -1.0
183,516 + -1.0
183,516 + +1.0
183,516 + -0.9
183,517 - -0.7
183,517 - -0.5
183,517 - +0.0
183,517 - -1.8
183,517 - -0.7
183,523 + -2.6
183,523 + +0.5
183,649 + GFF185 0.23 +0.6
183,649 + GFF185 0.23 -1.4
183,650 - GFF185 0.23 +0.5
183,650 - GFF185 0.23 -1.8
183,785 + GFF185 0.48 -1.0
183,785 + GFF185 0.48 -0.3
183,785 + GFF185 0.48 -1.6
183,785 + GFF185 0.48 -1.3
183,785 + GFF185 0.48 -1.6
183,785 + GFF185 0.48 -1.6
183,785 + GFF185 0.48 -0.7
183,786 - GFF185 0.49 -0.6
183,786 - GFF185 0.49 -0.3
183,786 - GFF185 0.49 +0.0
183,786 - GFF185 0.49 +0.2
183,786 - GFF185 0.49 -0.4
183,786 - GFF185 0.49 +0.2
183,864 + GFF185 0.63 +0.4
183,864 + GFF185 0.63 +0.3
183,864 + GFF185 0.63 +0.3
183,865 - GFF185 0.63 -1.0
183,880 + GFF185 0.66 -0.2
183,880 + GFF185 0.66 -1.2
183,880 + GFF185 0.66 -1.6
183,880 + GFF185 0.66 -0.3
183,880 + GFF185 0.66 -1.2
183,880 + GFF185 0.66 -0.6
183,880 + GFF185 0.66 -1.6
183,881 - GFF185 0.66 +0.6
183,916 + GFF185 0.73 -2.5
183,989 + GFF185 0.86 +0.3
184,010 + -0.7
184,010 + -1.3
184,010 + +0.5
184,011 - -1.6
184,011 - +0.4
184,011 - -0.5
184,012 + -0.4
184,013 - -0.7
184,015 + +0.0
184,015 + -1.2
184,015 + +0.5
184,016 - -0.3
184,073 + +0.3
184,073 + -1.5
184,073 + -1.6
184,073 + -0.2
184,074 - +1.7
184,074 - +0.6
184,074 - -2.5
184,074 - -0.3
184,074 - -1.0
184,207 - GFF186 0.12 +0.4
184,207 - GFF186 0.12 -0.8
184,207 - GFF186 0.12 -1.3
184,317 + GFF186 0.22 -1.8
184,317 + GFF186 0.22 +0.2
184,317 + GFF186 0.22 -0.9
184,317 + GFF186 0.22 +0.6
184,318 - GFF186 0.22 -0.7
184,318 - GFF186 0.22 -0.7
184,402 - GFF186 0.30 -1.8
184,447 - GFF186 0.34 -0.5
184,447 - GFF186 0.34 -0.6

Or see this region's nucleotide sequence