Strain Fitness in Methylophilus sp. DMC18 around GFF1346

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1345 and GFF1346 are separated by 182 nucleotidesGFF1346 and GFF1347 are separated by 59 nucleotides GFF1345 - hypothetical protein, at 610,449 to 611,297 GFF1345 GFF1346 - Motility protein A, at 611,480 to 612,337 GFF1346 GFF1347 - Motility protein B, at 612,397 to 613,341 GFF1347 Position (kb) 611 612 613Strain fitness (log2 ratio) -2 -1 0 1at 610.510 kb on + strandat 610.537 kb on + strand, within GFF1345at 610.538 kb on - strand, within GFF1345at 610.556 kb on + strand, within GFF1345at 610.556 kb on + strand, within GFF1345at 610.556 kb on + strand, within GFF1345at 610.556 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.558 kb on + strand, within GFF1345at 610.559 kb on - strand, within GFF1345at 610.559 kb on - strand, within GFF1345at 610.559 kb on - strand, within GFF1345at 610.600 kb on + strand, within GFF1345at 610.601 kb on - strand, within GFF1345at 610.615 kb on + strand, within GFF1345at 610.616 kb on - strand, within GFF1345at 610.667 kb on + strand, within GFF1345at 610.667 kb on + strand, within GFF1345at 610.667 kb on + strand, within GFF1345at 610.668 kb on - strand, within GFF1345at 610.766 kb on + strand, within GFF1345at 610.766 kb on + strand, within GFF1345at 610.766 kb on + strand, within GFF1345at 610.766 kb on + strand, within GFF1345at 610.767 kb on - strand, within GFF1345at 610.767 kb on - strand, within GFF1345at 610.767 kb on - strand, within GFF1345at 610.767 kb on - strand, within GFF1345at 610.767 kb on - strand, within GFF1345at 610.769 kb on + strand, within GFF1345at 610.769 kb on + strand, within GFF1345at 610.770 kb on - strand, within GFF1345at 610.770 kb on - strand, within GFF1345at 610.770 kb on - strand, within GFF1345at 610.770 kb on - strand, within GFF1345at 610.802 kb on + strand, within GFF1345at 610.808 kb on + strand, within GFF1345at 610.809 kb on - strand, within GFF1345at 610.821 kb on + strand, within GFF1345at 610.821 kb on + strand, within GFF1345at 610.821 kb on + strand, within GFF1345at 610.821 kb on + strand, within GFF1345at 610.831 kb on + strand, within GFF1345at 610.831 kb on + strand, within GFF1345at 611.079 kb on - strand, within GFF1345at 611.133 kb on + strand, within GFF1345at 611.133 kb on + strand, within GFF1345at 611.253 kb on + strandat 611.280 kb on + strandat 611.280 kb on + strandat 611.280 kb on + strandat 611.281 kb on - strandat 611.281 kb on - strandat 611.287 kb on - strandat 611.295 kb on + strandat 611.296 kb on - strandat 611.306 kb on + strandat 611.307 kb on - strandat 611.307 kb on - strandat 611.307 kb on - strandat 611.320 kb on - strandat 611.382 kb on + strandat 611.382 kb on + strandat 611.386 kb on + strandat 611.386 kb on + strandat 611.386 kb on + strandat 611.386 kb on + strandat 611.387 kb on - strandat 611.398 kb on - strandat 611.408 kb on + strandat 611.408 kb on + strandat 611.440 kb on + strandat 611.449 kb on - strandat 611.449 kb on - strandat 611.475 kb on + strandat 611.475 kb on + strandat 611.476 kb on - strandat 611.484 kb on + strandat 611.499 kb on - strandat 611.531 kb on + strandat 611.532 kb on - strandat 611.605 kb on - strand, within GFF1346at 611.653 kb on + strand, within GFF1346at 611.654 kb on - strand, within GFF1346at 611.654 kb on - strand, within GFF1346at 611.661 kb on + strand, within GFF1346at 611.661 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.702 kb on + strand, within GFF1346at 611.703 kb on - strand, within GFF1346at 611.703 kb on - strand, within GFF1346at 611.703 kb on - strand, within GFF1346at 611.703 kb on - strand, within GFF1346at 611.703 kb on - strand, within GFF1346at 611.749 kb on + strand, within GFF1346at 611.864 kb on + strand, within GFF1346at 611.864 kb on + strand, within GFF1346at 611.865 kb on - strand, within GFF1346at 611.971 kb on + strand, within GFF1346at 611.972 kb on - strand, within GFF1346at 612.008 kb on - strand, within GFF1346at 612.012 kb on + strand, within GFF1346at 612.012 kb on + strand, within GFF1346at 612.012 kb on + strand, within GFF1346at 612.012 kb on + strand, within GFF1346at 612.013 kb on - strand, within GFF1346at 612.013 kb on - strand, within GFF1346at 612.013 kb on - strand, within GFF1346at 612.033 kb on + strand, within GFF1346at 612.033 kb on + strand, within GFF1346at 612.033 kb on + strand, within GFF1346at 612.033 kb on + strand, within GFF1346at 612.034 kb on - strand, within GFF1346at 612.116 kb on - strand, within GFF1346at 612.116 kb on - strand, within GFF1346at 612.129 kb on - strand, within GFF1346at 612.233 kb on + strand, within GFF1346at 612.234 kb on - strand, within GFF1346at 612.276 kb on - strandat 612.276 kb on - strandat 612.276 kb on - strandat 612.315 kb on - strandat 612.411 kb on + strandat 612.411 kb on + strandat 612.411 kb on + strandat 612.411 kb on + strandat 612.412 kb on - strandat 612.412 kb on - strandat 612.412 kb on - strandat 612.485 kb on - strandat 612.485 kb on - strandat 612.549 kb on + strand, within GFF1347at 612.550 kb on - strand, within GFF1347at 612.578 kb on - strand, within GFF1347at 612.582 kb on + strand, within GFF1347at 612.583 kb on - strand, within GFF1347at 612.672 kb on + strand, within GFF1347at 612.672 kb on + strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.727 kb on - strand, within GFF1347at 612.727 kb on - strand, within GFF1347at 612.740 kb on + strand, within GFF1347at 612.848 kb on + strand, within GFF1347at 612.881 kb on + strand, within GFF1347at 612.943 kb on + strand, within GFF1347at 612.994 kb on - strand, within GFF1347at 613.033 kb on + strand, within GFF1347at 613.034 kb on - strand, within GFF1347at 613.054 kb on + strand, within GFF1347at 613.060 kb on - strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.250 kb on + strandat 613.250 kb on + strandat 613.251 kb on - strandat 613.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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610,510 + -0.8
610,537 + GFF1345 0.10 -1.1
610,538 - GFF1345 0.10 -0.7
610,556 + GFF1345 0.13 -0.3
610,556 + GFF1345 0.13 -0.9
610,556 + GFF1345 0.13 +0.4
610,556 + GFF1345 0.13 +0.9
610,558 + GFF1345 0.13 -0.7
610,558 + GFF1345 0.13 +0.2
610,558 + GFF1345 0.13 -1.4
610,558 + GFF1345 0.13 -1.2
610,558 + GFF1345 0.13 -1.3
610,558 + GFF1345 0.13 +0.1
610,559 - GFF1345 0.13 -0.9
610,559 - GFF1345 0.13 +1.2
610,559 - GFF1345 0.13 -0.3
610,600 + GFF1345 0.18 -0.9
610,601 - GFF1345 0.18 +0.9
610,615 + GFF1345 0.20 -0.3
610,616 - GFF1345 0.20 -1.9
610,667 + GFF1345 0.26 -1.0
610,667 + GFF1345 0.26 -1.3
610,667 + GFF1345 0.26 -1.1
610,668 - GFF1345 0.26 +0.0
610,766 + GFF1345 0.37 -0.4
610,766 + GFF1345 0.37 +0.2
610,766 + GFF1345 0.37 -1.9
610,766 + GFF1345 0.37 -1.4
610,767 - GFF1345 0.37 -0.1
610,767 - GFF1345 0.37 -1.9
610,767 - GFF1345 0.37 +0.1
610,767 - GFF1345 0.37 -1.1
610,767 - GFF1345 0.37 -0.5
610,769 + GFF1345 0.38 -0.5
610,769 + GFF1345 0.38 -0.5
610,770 - GFF1345 0.38 -1.1
610,770 - GFF1345 0.38 +0.2
610,770 - GFF1345 0.38 +0.0
610,770 - GFF1345 0.38 -2.0
610,802 + GFF1345 0.42 +0.5
610,808 + GFF1345 0.42 -0.9
610,809 - GFF1345 0.42 -0.4
610,821 + GFF1345 0.44 +1.4
610,821 + GFF1345 0.44 -1.1
610,821 + GFF1345 0.44 -1.0
610,821 + GFF1345 0.44 +1.3
610,831 + GFF1345 0.45 +0.3
610,831 + GFF1345 0.45 -0.7
611,079 - GFF1345 0.74 -1.4
611,133 + GFF1345 0.81 +0.2
611,133 + GFF1345 0.81 +0.0
611,253 + +0.2
611,280 + -0.9
611,280 + -1.4
611,280 + -0.7
611,281 - +0.4
611,281 - -0.3
611,287 - -1.1
611,295 + -0.9
611,296 - -0.9
611,306 + -1.9
611,307 - -1.5
611,307 - -0.5
611,307 - -1.7
611,320 - -0.7
611,382 + -1.1
611,382 + -0.1
611,386 + +0.2
611,386 + -1.9
611,386 + +0.9
611,386 + +0.5
611,387 - -0.7
611,398 - -0.3
611,408 + -0.1
611,408 + -0.3
611,440 + -0.4
611,449 - -0.7
611,449 - -0.1
611,475 + -0.1
611,475 + +0.3
611,476 - -1.7
611,484 + -0.3
611,499 - -0.7
611,531 + -1.7
611,532 - -0.3
611,605 - GFF1346 0.15 -0.1
611,653 + GFF1346 0.20 -0.1
611,654 - GFF1346 0.20 -0.1
611,654 - GFF1346 0.20 -1.1
611,661 + GFF1346 0.21 -0.0
611,661 + GFF1346 0.21 -0.5
611,702 + GFF1346 0.26 -0.2
611,702 + GFF1346 0.26 -0.3
611,702 + GFF1346 0.26 +0.1
611,702 + GFF1346 0.26 -1.1
611,702 + GFF1346 0.26 -0.2
611,702 + GFF1346 0.26 +0.7
611,702 + GFF1346 0.26 +0.5
611,702 + GFF1346 0.26 -1.4
611,703 - GFF1346 0.26 -1.4
611,703 - GFF1346 0.26 -0.1
611,703 - GFF1346 0.26 -0.1
611,703 - GFF1346 0.26 +0.2
611,703 - GFF1346 0.26 -0.1
611,749 + GFF1346 0.31 +0.2
611,864 + GFF1346 0.45 -1.5
611,864 + GFF1346 0.45 +0.3
611,865 - GFF1346 0.45 -2.7
611,971 + GFF1346 0.57 -1.1
611,972 - GFF1346 0.57 -0.3
612,008 - GFF1346 0.62 +0.1
612,012 + GFF1346 0.62 -0.1
612,012 + GFF1346 0.62 +0.3
612,012 + GFF1346 0.62 +1.6
612,012 + GFF1346 0.62 +0.5
612,013 - GFF1346 0.62 -1.4
612,013 - GFF1346 0.62 +1.1
612,013 - GFF1346 0.62 -1.1
612,033 + GFF1346 0.64 +0.3
612,033 + GFF1346 0.64 -0.1
612,033 + GFF1346 0.64 +0.1
612,033 + GFF1346 0.64 +0.2
612,034 - GFF1346 0.65 -0.2
612,116 - GFF1346 0.74 -0.7
612,116 - GFF1346 0.74 -0.1
612,129 - GFF1346 0.76 -1.1
612,233 + GFF1346 0.88 -0.5
612,234 - GFF1346 0.88 -0.5
612,276 - +0.6
612,276 - -0.1
612,276 - -1.9
612,315 - -2.2
612,411 + -0.5
612,411 + -0.1
612,411 + -0.1
612,411 + +1.4
612,412 - +0.4
612,412 - -0.4
612,412 - -0.9
612,485 - -0.1
612,485 - -0.3
612,549 + GFF1347 0.16 -1.4
612,550 - GFF1347 0.16 +0.9
612,578 - GFF1347 0.19 -0.2
612,582 + GFF1347 0.20 -0.1
612,583 - GFF1347 0.20 +1.2
612,672 + GFF1347 0.29 -0.3
612,672 + GFF1347 0.29 -0.6
612,673 - GFF1347 0.29 -2.5
612,673 - GFF1347 0.29 +0.6
612,673 - GFF1347 0.29 +1.5
612,727 - GFF1347 0.35 +1.1
612,727 - GFF1347 0.35 +0.5
612,740 + GFF1347 0.36 +1.4
612,848 + GFF1347 0.48 -0.5
612,881 + GFF1347 0.51 +0.6
612,943 + GFF1347 0.58 +0.4
612,994 - GFF1347 0.63 +0.2
613,033 + GFF1347 0.67 -0.2
613,034 - GFF1347 0.67 -0.6
613,054 + GFF1347 0.70 -0.4
613,060 - GFF1347 0.70 -1.4
613,136 + GFF1347 0.78 -0.4
613,136 + GFF1347 0.78 +0.9
613,250 + -1.0
613,250 + -0.9
613,251 - -1.4
613,251 - -0.1

Or see this region's nucleotide sequence