Strain Fitness in Methylophilus sp. DMC18 around GFF1024

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1023 and GFF1024 are separated by 24 nucleotidesGFF1024 and GFF1025 overlap by 32 nucleotidesGFF1025 and GFF1026 are separated by 40 nucleotides GFF1023 - hypothetical protein, at 262,435 to 263,922 GFF1023 GFF1024 - Formate--tetrahydrofolate ligase, at 263,947 to 265,590 GFF1024 GFF1025 - IMPACT family member YigZ, at 265,559 to 266,158 GFF1025 GFF1026 - hypothetical protein, at 266,199 to 267,203 GFF1026 Position (kb) 263 264 265 266Strain fitness (log2 ratio) -2 -1 0 1at 262.956 kb on + strand, within GFF1023at 262.957 kb on - strand, within GFF1023at 263.091 kb on + strand, within GFF1023at 263.091 kb on + strand, within GFF1023at 263.137 kb on + strand, within GFF1023at 263.138 kb on - strand, within GFF1023at 263.243 kb on + strand, within GFF1023at 263.243 kb on + strand, within GFF1023at 263.243 kb on + strand, within GFF1023at 263.244 kb on + strand, within GFF1023at 263.244 kb on - strand, within GFF1023at 263.244 kb on - strand, within GFF1023at 263.291 kb on + strand, within GFF1023at 263.291 kb on + strand, within GFF1023at 263.292 kb on - strand, within GFF1023at 263.326 kb on + strand, within GFF1023at 263.327 kb on - strand, within GFF1023at 263.327 kb on - strand, within GFF1023at 263.352 kb on + strand, within GFF1023at 263.502 kb on - strand, within GFF1023at 263.686 kb on + strand, within GFF1023at 263.686 kb on + strand, within GFF1023at 263.686 kb on + strand, within GFF1023at 263.788 kb on - strandat 263.886 kb on - strandat 263.886 kb on - strandat 263.920 kb on + strandat 263.992 kb on - strandat 264.043 kb on + strandat 264.043 kb on + strandat 264.044 kb on - strandat 264.044 kb on - strandat 264.044 kb on - strandat 264.044 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.177 kb on - strand, within GFF1024at 264.287 kb on - strand, within GFF1024at 264.327 kb on + strand, within GFF1024at 264.360 kb on + strand, within GFF1024at 264.360 kb on + strand, within GFF1024at 264.361 kb on - strand, within GFF1024at 264.380 kb on + strand, within GFF1024at 264.380 kb on + strand, within GFF1024at 264.380 kb on + strand, within GFF1024at 264.380 kb on + strand, within GFF1024at 264.381 kb on - strand, within GFF1024at 264.381 kb on - strand, within GFF1024at 264.384 kb on + strand, within GFF1024at 264.385 kb on - strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.390 kb on + strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.391 kb on - strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.392 kb on + strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.393 kb on - strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.394 kb on + strand, within GFF1024at 264.395 kb on - strand, within GFF1024at 264.395 kb on - strand, within GFF1024at 264.395 kb on - strand, within GFF1024at 264.395 kb on - strand, within GFF1024at 264.395 kb on - strand, within GFF1024at 264.442 kb on - strand, within GFF1024at 264.442 kb on - strand, within GFF1024at 264.443 kb on + strand, within GFF1024at 264.443 kb on + strand, within GFF1024at 264.444 kb on - strand, within GFF1024at 264.444 kb on - strand, within GFF1024at 264.444 kb on - strand, within GFF1024at 264.444 kb on - strand, within GFF1024at 264.447 kb on + strand, within GFF1024at 264.447 kb on + strand, within GFF1024at 264.447 kb on + strand, within GFF1024at 264.447 kb on + strand, within GFF1024at 264.447 kb on + strand, within GFF1024at 264.448 kb on - strand, within GFF1024at 264.448 kb on - strand, within GFF1024at 264.448 kb on - strand, within GFF1024at 264.448 kb on - strand, within GFF1024at 264.464 kb on + strand, within GFF1024at 264.486 kb on + strand, within GFF1024at 264.487 kb on - strand, within GFF1024at 264.490 kb on - strand, within GFF1024at 264.496 kb on - strand, within GFF1024at 264.508 kb on - strand, within GFF1024at 264.508 kb on - strand, within GFF1024at 264.573 kb on + strand, within GFF1024at 264.573 kb on + strand, within GFF1024at 264.574 kb on - strand, within GFF1024at 264.666 kb on + strand, within GFF1024at 264.666 kb on + strand, within GFF1024at 264.666 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.722 kb on + strand, within GFF1024at 264.723 kb on - strand, within GFF1024at 264.723 kb on - strand, within GFF1024at 264.723 kb on - strand, within GFF1024at 264.745 kb on - strand, within GFF1024at 264.745 kb on - strand, within GFF1024at 264.802 kb on + strand, within GFF1024at 264.802 kb on + strand, within GFF1024at 264.802 kb on + strand, within GFF1024at 264.803 kb on - strand, within GFF1024at 264.803 kb on - strand, within GFF1024at 264.803 kb on - strand, within GFF1024at 264.859 kb on - strand, within GFF1024at 264.928 kb on + strand, within GFF1024at 265.023 kb on - strand, within GFF1024at 265.098 kb on - strand, within GFF1024at 265.100 kb on + strand, within GFF1024at 265.101 kb on - strand, within GFF1024at 265.234 kb on + strand, within GFF1024at 265.234 kb on + strand, within GFF1024at 265.234 kb on + strand, within GFF1024at 265.234 kb on + strand, within GFF1024at 265.235 kb on - strand, within GFF1024at 265.235 kb on - strand, within GFF1024at 265.265 kb on + strand, within GFF1024at 265.311 kb on + strand, within GFF1024at 265.390 kb on + strand, within GFF1024at 265.390 kb on + strand, within GFF1024at 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.439 kb on + strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.440 kb on - strandat 265.491 kb on + strandat 265.491 kb on + strandat 265.492 kb on - strandat 265.492 kb on - strandat 265.569 kb on + strandat 265.569 kb on + strandat 265.569 kb on + strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.570 kb on - strandat 265.574 kb on + strandat 265.645 kb on + strand, within GFF1025at 265.645 kb on + strand, within GFF1025at 265.646 kb on - strand, within GFF1025at 265.751 kb on + strand, within GFF1025at 265.751 kb on + strand, within GFF1025at 265.829 kb on - strand, within GFF1025at 265.829 kb on - strand, within GFF1025at 265.862 kb on + strand, within GFF1025at 265.862 kb on + strand, within GFF1025at 265.862 kb on + strand, within GFF1025at 265.862 kb on + strand, within GFF1025at 265.862 kb on + strand, within GFF1025at 265.895 kb on + strand, within GFF1025at 265.895 kb on + strand, within GFF1025at 265.895 kb on + strand, within GFF1025at 266.021 kb on + strand, within GFF1025at 266.021 kb on + strand, within GFF1025at 266.022 kb on - strand, within GFF1025at 266.022 kb on - strand, within GFF1025at 266.022 kb on - strand, within GFF1025at 266.023 kb on + strand, within GFF1025at 266.052 kb on + strand, within GFF1025at 266.142 kb on + strandat 266.143 kb on - strandat 266.168 kb on - strandat 266.222 kb on + strandat 266.223 kb on - strandat 266.252 kb on - strandat 266.263 kb on + strandat 266.278 kb on + strandat 266.364 kb on + strand, within GFF1026at 266.495 kb on + strand, within GFF1026at 266.495 kb on + strand, within GFF1026at 266.564 kb on + strand, within GFF1026at 266.564 kb on + strand, within GFF1026at 266.565 kb on - strand, within GFF1026

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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262,956 + GFF1023 0.35 +0.9
262,957 - GFF1023 0.35 +0.5
263,091 + GFF1023 0.44 -1.4
263,091 + GFF1023 0.44 -0.4
263,137 + GFF1023 0.47 -1.9
263,138 - GFF1023 0.47 -1.1
263,243 + GFF1023 0.54 -0.7
263,243 + GFF1023 0.54 -0.6
263,243 + GFF1023 0.54 -1.1
263,244 + GFF1023 0.54 -0.8
263,244 - GFF1023 0.54 -0.4
263,244 - GFF1023 0.54 -0.5
263,291 + GFF1023 0.58 -0.6
263,291 + GFF1023 0.58 +0.2
263,292 - GFF1023 0.58 -1.2
263,326 + GFF1023 0.60 -1.4
263,327 - GFF1023 0.60 -0.6
263,327 - GFF1023 0.60 +0.2
263,352 + GFF1023 0.62 +0.3
263,502 - GFF1023 0.72 +0.5
263,686 + GFF1023 0.84 -1.2
263,686 + GFF1023 0.84 +0.9
263,686 + GFF1023 0.84 -0.9
263,788 - +0.2
263,886 - -1.4
263,886 - -0.1
263,920 + -2.2
263,992 - -1.9
264,043 + +0.6
264,043 + -0.1
264,044 - -1.1
264,044 - -0.9
264,044 - +0.1
264,044 - -0.3
264,055 - -0.6
264,055 - -0.9
264,055 - -0.5
264,177 - GFF1024 0.14 -1.4
264,287 - GFF1024 0.21 +0.3
264,327 + GFF1024 0.23 -0.1
264,360 + GFF1024 0.25 +0.5
264,360 + GFF1024 0.25 -1.9
264,361 - GFF1024 0.25 -0.4
264,380 + GFF1024 0.26 -0.2
264,380 + GFF1024 0.26 -0.6
264,380 + GFF1024 0.26 +0.2
264,380 + GFF1024 0.26 +0.3
264,381 - GFF1024 0.26 -0.6
264,381 - GFF1024 0.26 -1.9
264,384 + GFF1024 0.27 -1.1
264,385 - GFF1024 0.27 -0.5
264,390 + GFF1024 0.27 -0.4
264,390 + GFF1024 0.27 +0.4
264,390 + GFF1024 0.27 +0.1
264,390 + GFF1024 0.27 -0.6
264,390 + GFF1024 0.27 -1.1
264,390 + GFF1024 0.27 -1.0
264,390 + GFF1024 0.27 -0.2
264,390 + GFF1024 0.27 -0.1
264,390 + GFF1024 0.27 -0.6
264,390 + GFF1024 0.27 +0.2
264,390 + GFF1024 0.27 -0.8
264,390 + GFF1024 0.27 -2.4
264,390 + GFF1024 0.27 -0.7
264,390 + GFF1024 0.27 -1.6
264,390 + GFF1024 0.27 +0.2
264,390 + GFF1024 0.27 -0.5
264,390 + GFF1024 0.27 -1.1
264,390 + GFF1024 0.27 -1.1
264,391 - GFF1024 0.27 -1.5
264,391 - GFF1024 0.27 -2.2
264,391 - GFF1024 0.27 -1.5
264,391 - GFF1024 0.27 -0.9
264,391 - GFF1024 0.27 -1.9
264,391 - GFF1024 0.27 -2.1
264,391 - GFF1024 0.27 +0.0
264,391 - GFF1024 0.27 -1.8
264,391 - GFF1024 0.27 -0.4
264,391 - GFF1024 0.27 -1.1
264,391 - GFF1024 0.27 -0.1
264,391 - GFF1024 0.27 -0.3
264,391 - GFF1024 0.27 -1.2
264,391 - GFF1024 0.27 -1.0
264,391 - GFF1024 0.27 +0.2
264,391 - GFF1024 0.27 -1.3
264,392 + GFF1024 0.27 +0.5
264,392 + GFF1024 0.27 +0.1
264,392 + GFF1024 0.27 -1.4
264,392 + GFF1024 0.27 -1.4
264,392 + GFF1024 0.27 -0.3
264,392 + GFF1024 0.27 -2.6
264,392 + GFF1024 0.27 -0.3
264,392 + GFF1024 0.27 +0.2
264,392 + GFF1024 0.27 -1.3
264,392 + GFF1024 0.27 -1.9
264,392 + GFF1024 0.27 -0.5
264,392 + GFF1024 0.27 +0.2
264,392 + GFF1024 0.27 -0.1
264,392 + GFF1024 0.27 +0.1
264,392 + GFF1024 0.27 -0.8
264,392 + GFF1024 0.27 -0.1
264,392 + GFF1024 0.27 -2.1
264,392 + GFF1024 0.27 -1.4
264,392 + GFF1024 0.27 -2.1
264,392 + GFF1024 0.27 +0.1
264,392 + GFF1024 0.27 -0.1
264,392 + GFF1024 0.27 -1.4
264,392 + GFF1024 0.27 -0.3
264,392 + GFF1024 0.27 +0.2
264,392 + GFF1024 0.27 -1.0
264,392 + GFF1024 0.27 -2.1
264,393 - GFF1024 0.27 -0.7
264,393 - GFF1024 0.27 -1.9
264,393 - GFF1024 0.27 +0.5
264,393 - GFF1024 0.27 -0.6
264,393 - GFF1024 0.27 +0.6
264,393 - GFF1024 0.27 -2.3
264,393 - GFF1024 0.27 +0.4
264,393 - GFF1024 0.27 -0.2
264,393 - GFF1024 0.27 -1.0
264,393 - GFF1024 0.27 -2.2
264,393 - GFF1024 0.27 -1.4
264,393 - GFF1024 0.27 -0.8
264,393 - GFF1024 0.27 +0.6
264,394 + GFF1024 0.27 -1.1
264,394 + GFF1024 0.27 -1.1
264,394 + GFF1024 0.27 +0.8
264,394 + GFF1024 0.27 -0.4
264,394 + GFF1024 0.27 -0.8
264,394 + GFF1024 0.27 -1.3
264,394 + GFF1024 0.27 -0.6
264,395 - GFF1024 0.27 -1.6
264,395 - GFF1024 0.27 +0.1
264,395 - GFF1024 0.27 -1.4
264,395 - GFF1024 0.27 -2.1
264,395 - GFF1024 0.27 -1.1
264,442 - GFF1024 0.30 -1.3
264,442 - GFF1024 0.30 -1.6
264,443 + GFF1024 0.30 -1.2
264,443 + GFF1024 0.30 -1.2
264,444 - GFF1024 0.30 -1.4
264,444 - GFF1024 0.30 -1.6
264,444 - GFF1024 0.30 -1.1
264,444 - GFF1024 0.30 -0.3
264,447 + GFF1024 0.30 -0.1
264,447 + GFF1024 0.30 -0.6
264,447 + GFF1024 0.30 -1.1
264,447 + GFF1024 0.30 -1.2
264,447 + GFF1024 0.30 +0.5
264,448 - GFF1024 0.30 +0.9
264,448 - GFF1024 0.30 -1.4
264,448 - GFF1024 0.30 +0.9
264,448 - GFF1024 0.30 -0.6
264,464 + GFF1024 0.31 +0.5
264,486 + GFF1024 0.33 -1.4
264,487 - GFF1024 0.33 -0.6
264,490 - GFF1024 0.33 -1.1
264,496 - GFF1024 0.33 +0.7
264,508 - GFF1024 0.34 -2.1
264,508 - GFF1024 0.34 -0.4
264,573 + GFF1024 0.38 -1.4
264,573 + GFF1024 0.38 -1.1
264,574 - GFF1024 0.38 +0.5
264,666 + GFF1024 0.44 -2.5
264,666 + GFF1024 0.44 -2.1
264,666 + GFF1024 0.44 -0.5
264,722 + GFF1024 0.47 -1.9
264,722 + GFF1024 0.47 -1.4
264,722 + GFF1024 0.47 +0.2
264,722 + GFF1024 0.47 -2.1
264,722 + GFF1024 0.47 -2.4
264,722 + GFF1024 0.47 -1.4
264,722 + GFF1024 0.47 -1.4
264,723 - GFF1024 0.47 -2.1
264,723 - GFF1024 0.47 -0.9
264,723 - GFF1024 0.47 +0.1
264,745 - GFF1024 0.49 -1.9
264,745 - GFF1024 0.49 -0.6
264,802 + GFF1024 0.52 -1.1
264,802 + GFF1024 0.52 -0.4
264,802 + GFF1024 0.52 -1.4
264,803 - GFF1024 0.52 -0.5
264,803 - GFF1024 0.52 -1.6
264,803 - GFF1024 0.52 -2.3
264,859 - GFF1024 0.55 +0.4
264,928 + GFF1024 0.60 -0.4
265,023 - GFF1024 0.65 -0.1
265,098 - GFF1024 0.70 -0.1
265,100 + GFF1024 0.70 -0.9
265,101 - GFF1024 0.70 -1.0
265,234 + GFF1024 0.78 -0.1
265,234 + GFF1024 0.78 +0.5
265,234 + GFF1024 0.78 -0.4
265,234 + GFF1024 0.78 -0.9
265,235 - GFF1024 0.78 -0.9
265,235 - GFF1024 0.78 -0.1
265,265 + GFF1024 0.80 -1.9
265,311 + GFF1024 0.83 -1.4
265,390 + GFF1024 0.88 -0.1
265,390 + GFF1024 0.88 -0.8
265,439 + -0.7
265,439 + -0.3
265,439 + +0.4
265,439 + -0.3
265,439 + -1.1
265,439 + -0.2
265,439 + -1.4
265,439 + -1.7
265,439 + -0.6
265,439 + -1.4
265,439 + -1.2
265,439 + +0.1
265,440 - -1.6
265,440 - -2.1
265,440 - -0.4
265,440 - -1.5
265,440 - -2.1
265,440 - -1.6
265,440 - +0.9
265,491 + +0.6
265,491 + -1.4
265,492 - -1.1
265,492 - +0.2
265,569 + -0.4
265,569 + -0.4
265,569 + -0.9
265,570 - +0.5
265,570 - -0.2
265,570 - -0.5
265,570 - +0.8
265,570 - -2.6
265,570 - -0.6
265,570 - -0.4
265,570 - -0.5
265,574 + -0.6
265,645 + GFF1025 0.14 -0.1
265,645 + GFF1025 0.14 -0.6
265,646 - GFF1025 0.14 -0.6
265,751 + GFF1025 0.32 -0.1
265,751 + GFF1025 0.32 +0.3
265,829 - GFF1025 0.45 -0.8
265,829 - GFF1025 0.45 -0.4
265,862 + GFF1025 0.51 -0.3
265,862 + GFF1025 0.51 -0.2
265,862 + GFF1025 0.51 -0.4
265,862 + GFF1025 0.51 -1.5
265,862 + GFF1025 0.51 -0.6
265,895 + GFF1025 0.56 -1.4
265,895 + GFF1025 0.56 -1.3
265,895 + GFF1025 0.56 -0.5
266,021 + GFF1025 0.77 -1.1
266,021 + GFF1025 0.77 -0.6
266,022 - GFF1025 0.77 -1.6
266,022 - GFF1025 0.77 -1.1
266,022 - GFF1025 0.77 -1.1
266,023 + GFF1025 0.77 +0.2
266,052 + GFF1025 0.82 -2.1
266,142 + -1.9
266,143 - -0.4
266,168 - -0.9
266,222 + +0.6
266,223 - +0.1
266,252 - -2.1
266,263 + -1.2
266,278 + -0.5
266,364 + GFF1026 0.16 -1.2
266,495 + GFF1026 0.29 -0.6
266,495 + GFF1026 0.29 -2.2
266,564 + GFF1026 0.36 -2.1
266,564 + GFF1026 0.36 -1.0
266,565 - GFF1026 0.36 +0.4

Or see this region's nucleotide sequence