Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_01599

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_01598 and GEMAOFIL_01599 are separated by 160 nucleotidesGEMAOFIL_01599 and GEMAOFIL_01600 are separated by 34 nucleotides GEMAOFIL_01598: GEMAOFIL_01598 - putative transporter YycB, at 1,782,491 to 1,783,678 _01598 GEMAOFIL_01599: GEMAOFIL_01599 - hypothetical protein, at 1,783,839 to 1,784,453 _01599 GEMAOFIL_01600: GEMAOFIL_01600 - hypothetical protein, at 1,784,488 to 1,785,354 _01600 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -1 0 1at 1782.849 kb on - strand, within GEMAOFIL_01598at 1782.880 kb on + strand, within GEMAOFIL_01598at 1782.973 kb on - strand, within GEMAOFIL_01598at 1782.973 kb on - strand, within GEMAOFIL_01598at 1782.975 kb on + strand, within GEMAOFIL_01598at 1782.975 kb on + strand, within GEMAOFIL_01598at 1782.975 kb on + strand, within GEMAOFIL_01598at 1782.975 kb on + strand, within GEMAOFIL_01598at 1782.975 kb on + strand, within GEMAOFIL_01598at 1782.976 kb on - strand, within GEMAOFIL_01598at 1783.006 kb on - strand, within GEMAOFIL_01598at 1783.126 kb on - strand, within GEMAOFIL_01598at 1783.257 kb on + strand, within GEMAOFIL_01598at 1783.257 kb on + strand, within GEMAOFIL_01598at 1783.909 kb on + strand, within GEMAOFIL_01599at 1783.910 kb on - strand, within GEMAOFIL_01599at 1783.910 kb on - strand, within GEMAOFIL_01599at 1783.935 kb on - strand, within GEMAOFIL_01599at 1784.095 kb on + strand, within GEMAOFIL_01599at 1784.466 kb on + strandat 1784.466 kb on + strandat 1784.634 kb on - strand, within GEMAOFIL_01600at 1784.879 kb on - strand, within GEMAOFIL_01600at 1785.009 kb on + strand, within GEMAOFIL_01600at 1785.009 kb on + strand, within GEMAOFIL_01600at 1785.010 kb on - strand, within GEMAOFIL_01600at 1785.087 kb on - strand, within GEMAOFIL_01600at 1785.110 kb on + strand, within GEMAOFIL_01600at 1785.111 kb on - strand, within GEMAOFIL_01600at 1785.111 kb on - strand, within GEMAOFIL_01600at 1785.111 kb on - strand, within GEMAOFIL_01600at 1785.111 kb on - strand, within GEMAOFIL_01600at 1785.111 kb on - strand, within GEMAOFIL_01600at 1785.264 kb on - strand, within GEMAOFIL_01600at 1785.396 kb on - strandat 1785.404 kb on + strandat 1785.405 kb on - strandat 1785.430 kb on + strandat 1785.431 kb on - strandat 1785.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,782,849 - GEMAOFIL_01598 0.30 -0.5
1,782,880 + GEMAOFIL_01598 0.33 +0.6
1,782,973 - GEMAOFIL_01598 0.41 +0.8
1,782,973 - GEMAOFIL_01598 0.41 +0.2
1,782,975 + GEMAOFIL_01598 0.41 +0.5
1,782,975 + GEMAOFIL_01598 0.41 -0.3
1,782,975 + GEMAOFIL_01598 0.41 +1.1
1,782,975 + GEMAOFIL_01598 0.41 +0.9
1,782,975 + GEMAOFIL_01598 0.41 +0.1
1,782,976 - GEMAOFIL_01598 0.41 +0.1
1,783,006 - GEMAOFIL_01598 0.43 +0.1
1,783,126 - GEMAOFIL_01598 0.53 -1.5
1,783,257 + GEMAOFIL_01598 0.64 -0.7
1,783,257 + GEMAOFIL_01598 0.64 -0.9
1,783,909 + GEMAOFIL_01599 0.11 -0.3
1,783,910 - GEMAOFIL_01599 0.12 -0.2
1,783,910 - GEMAOFIL_01599 0.12 -0.0
1,783,935 - GEMAOFIL_01599 0.16 +0.7
1,784,095 + GEMAOFIL_01599 0.42 +0.0
1,784,466 + -0.5
1,784,466 + +0.8
1,784,634 - GEMAOFIL_01600 0.17 +0.2
1,784,879 - GEMAOFIL_01600 0.45 -0.1
1,785,009 + GEMAOFIL_01600 0.60 -0.2
1,785,009 + GEMAOFIL_01600 0.60 -0.8
1,785,010 - GEMAOFIL_01600 0.60 -0.7
1,785,087 - GEMAOFIL_01600 0.69 -1.0
1,785,110 + GEMAOFIL_01600 0.72 +0.4
1,785,111 - GEMAOFIL_01600 0.72 -0.6
1,785,111 - GEMAOFIL_01600 0.72 -0.3
1,785,111 - GEMAOFIL_01600 0.72 +0.1
1,785,111 - GEMAOFIL_01600 0.72 -0.2
1,785,111 - GEMAOFIL_01600 0.72 +0.0
1,785,264 - GEMAOFIL_01600 0.90 +0.4
1,785,396 - +0.0
1,785,404 + -0.2
1,785,405 - -1.1
1,785,430 + -0.4
1,785,431 - +0.5
1,785,436 - +0.0

Or see this region's nucleotide sequence