Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_01246

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_01245 and GEMAOFIL_01246 are separated by 154 nucleotidesGEMAOFIL_01246 and GEMAOFIL_01247 are separated by 51 nucleotidesGEMAOFIL_01247 and GEMAOFIL_01248 are separated by 141 nucleotides GEMAOFIL_01245: GEMAOFIL_01245 - GTPase Era, at 1,401,365 to 1,402,267 _01245 GEMAOFIL_01246: GEMAOFIL_01246 - DNA repair protein RecO, at 1,402,422 to 1,403,108 _01246 GEMAOFIL_01247: GEMAOFIL_01247 - 'Pyridoxine 5'-phosphate synthase' transl_table=11, at 1,403,160 to 1,403,903 _01247 GEMAOFIL_01248: GEMAOFIL_01248 - Multicopper oxidase MmcO, at 1,404,045 to 1,405,427 _01248 Position (kb) 1402 1403 1404Strain fitness (log2 ratio) -1 0 1at 1402.265 kb on + strandat 1402.266 kb on - strandat 1402.327 kb on - strandat 1402.345 kb on - strandat 1402.345 kb on - strandat 1402.345 kb on - strandat 1402.350 kb on + strandat 1402.453 kb on - strandat 1402.559 kb on + strand, within GEMAOFIL_01246at 1402.845 kb on + strand, within GEMAOFIL_01246at 1402.846 kb on - strand, within GEMAOFIL_01246at 1402.902 kb on + strand, within GEMAOFIL_01246at 1402.903 kb on - strand, within GEMAOFIL_01246at 1402.903 kb on - strand, within GEMAOFIL_01246at 1403.119 kb on + strandat 1403.119 kb on + strandat 1403.119 kb on + strandat 1403.120 kb on - strandat 1403.120 kb on - strandat 1403.120 kb on - strandat 1403.901 kb on + strandat 1403.976 kb on + strandat 1403.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,402,265 + -0.1
1,402,266 - -0.4
1,402,327 - +1.0
1,402,345 - -0.5
1,402,345 - +0.4
1,402,345 - +0.4
1,402,350 + +0.2
1,402,453 - -0.3
1,402,559 + GEMAOFIL_01246 0.20 -0.3
1,402,845 + GEMAOFIL_01246 0.62 -0.1
1,402,846 - GEMAOFIL_01246 0.62 +0.8
1,402,902 + GEMAOFIL_01246 0.70 -0.4
1,402,903 - GEMAOFIL_01246 0.70 -0.1
1,402,903 - GEMAOFIL_01246 0.70 -0.7
1,403,119 + +1.3
1,403,119 + -0.1
1,403,119 + -0.0
1,403,120 - +0.2
1,403,120 - -0.5
1,403,120 - +1.4
1,403,901 + -0.4
1,403,976 + +0.0
1,403,991 + -0.5

Or see this region's nucleotide sequence