Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_01002 and GEMAOFIL_01003 are separated by 207 nucleotides GEMAOFIL_01003 and GEMAOFIL_01004 are separated by 1 nucleotides GEMAOFIL_01004 and GEMAOFIL_01005 are separated by 65 nucleotides GEMAOFIL_01005 and GEMAOFIL_01006 are separated by 348 nucleotides
GEMAOFIL_01002: GEMAOFIL_01002 - putative TonB-dependent receptor BfrD, at 1,144,723 to 1,147,008
_01002
GEMAOFIL_01003: GEMAOFIL_01003 - PKHD-type hydroxylase, at 1,147,216 to 1,147,896
_01003
GEMAOFIL_01004: GEMAOFIL_01004 - hypothetical protein, at 1,147,898 to 1,148,683
_01004
GEMAOFIL_01005: GEMAOFIL_01005 - hypothetical protein, at 1,148,749 to 1,149,015
_01005
GEMAOFIL_01006: GEMAOFIL_01006 - Lysine/ornithine decarboxylase, at 1,149,364 to 1,150,527
_01006
Position (kb) 1147
1148
1149 Strain fitness (log2 ratio) -1
0
1 at 1146.996 kb on + strand at 1146.997 kb on - strand at 1146.997 kb on - strand at 1147.111 kb on - strand at 1147.124 kb on - strand at 1147.133 kb on - strand at 1147.228 kb on - strand at 1147.228 kb on - strand at 1147.474 kb on + strand, within GEMAOFIL_01003 at 1147.475 kb on - strand, within GEMAOFIL_01003 at 1147.672 kb on + strand, within GEMAOFIL_01003 at 1147.861 kb on + strand at 1147.862 kb on - strand at 1148.205 kb on - strand, within GEMAOFIL_01004 at 1148.243 kb on + strand, within GEMAOFIL_01004 at 1148.243 kb on + strand, within GEMAOFIL_01004 at 1148.244 kb on - strand, within GEMAOFIL_01004 at 1148.244 kb on - strand, within GEMAOFIL_01004 at 1148.249 kb on + strand, within GEMAOFIL_01004 at 1148.250 kb on - strand, within GEMAOFIL_01004 at 1148.250 kb on - strand, within GEMAOFIL_01004 at 1148.312 kb on + strand, within GEMAOFIL_01004 at 1148.465 kb on + strand, within GEMAOFIL_01004 at 1148.466 kb on - strand, within GEMAOFIL_01004 at 1148.466 kb on - strand, within GEMAOFIL_01004 at 1148.564 kb on + strand, within GEMAOFIL_01004 at 1148.565 kb on - strand, within GEMAOFIL_01004 at 1148.577 kb on + strand, within GEMAOFIL_01004 at 1148.598 kb on + strand, within GEMAOFIL_01004 at 1148.690 kb on - strand at 1148.748 kb on + strand at 1148.749 kb on - strand at 1148.764 kb on - strand at 1148.982 kb on - strand, within GEMAOFIL_01005 at 1148.982 kb on - strand, within GEMAOFIL_01005 at 1149.083 kb on - strand at 1149.131 kb on + strand at 1149.194 kb on - strand at 1149.253 kb on - strand at 1149.254 kb on + strand at 1149.372 kb on - strand at 1149.429 kb on - strand at 1149.449 kb on + strand at 1149.488 kb on + strand, within GEMAOFIL_01006 at 1149.488 kb on + strand, within GEMAOFIL_01006 at 1149.488 kb on + strand, within GEMAOFIL_01006 at 1149.489 kb on - strand, within GEMAOFIL_01006 at 1149.489 kb on - strand, within GEMAOFIL_01006 at 1149.495 kb on - strand, within GEMAOFIL_01006 at 1149.503 kb on + strand, within GEMAOFIL_01006 at 1149.672 kb on + strand, within GEMAOFIL_01006
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,146,996 + -0.9 1,146,997 - -0.5 1,146,997 - +0.5 1,147,111 - -0.1 1,147,124 - +0.1 1,147,133 - -0.2 1,147,228 - -0.1 1,147,228 - -0.5 1,147,474 + GEMAOFIL_01003 0.38 -0.1 1,147,475 - GEMAOFIL_01003 0.38 +0.1 1,147,672 + GEMAOFIL_01003 0.67 +0.0 1,147,861 + +0.6 1,147,862 - -0.0 1,148,205 - GEMAOFIL_01004 0.39 -0.1 1,148,243 + GEMAOFIL_01004 0.44 -0.4 1,148,243 + GEMAOFIL_01004 0.44 -0.1 1,148,244 - GEMAOFIL_01004 0.44 -0.4 1,148,244 - GEMAOFIL_01004 0.44 +0.8 1,148,249 + GEMAOFIL_01004 0.45 +0.1 1,148,250 - GEMAOFIL_01004 0.45 +0.4 1,148,250 - GEMAOFIL_01004 0.45 -0.3 1,148,312 + GEMAOFIL_01004 0.53 -0.1 1,148,465 + GEMAOFIL_01004 0.72 -0.6 1,148,466 - GEMAOFIL_01004 0.72 -0.1 1,148,466 - GEMAOFIL_01004 0.72 -0.4 1,148,564 + GEMAOFIL_01004 0.85 +0.2 1,148,565 - GEMAOFIL_01004 0.85 +0.3 1,148,577 + GEMAOFIL_01004 0.86 +0.9 1,148,598 + GEMAOFIL_01004 0.89 +0.7 1,148,690 - -0.4 1,148,748 + -0.4 1,148,749 - -0.4 1,148,764 - -0.5 1,148,982 - GEMAOFIL_01005 0.87 -0.2 1,148,982 - GEMAOFIL_01005 0.87 -0.6 1,149,083 - +0.5 1,149,131 + +0.2 1,149,194 - -1.1 1,149,253 - -0.3 1,149,254 + +1.0 1,149,372 - +0.5 1,149,429 - -0.6 1,149,449 + +0.6 1,149,488 + GEMAOFIL_01006 0.11 -0.5 1,149,488 + GEMAOFIL_01006 0.11 +0.3 1,149,488 + GEMAOFIL_01006 0.11 +0.2 1,149,489 - GEMAOFIL_01006 0.11 +0.3 1,149,489 - GEMAOFIL_01006 0.11 -0.3 1,149,495 - GEMAOFIL_01006 0.11 -0.5 1,149,503 + GEMAOFIL_01006 0.12 -0.1 1,149,672 + GEMAOFIL_01006 0.26 +0.3
Or see this region's nucleotide sequence