Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00478

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00476 and GEMAOFIL_00477 are separated by 110 nucleotidesGEMAOFIL_00477 and GEMAOFIL_00478 are separated by 207 nucleotidesGEMAOFIL_00478 and GEMAOFIL_00479 overlap by 4 nucleotidesGEMAOFIL_00479 and GEMAOFIL_00480 are separated by 97 nucleotides GEMAOFIL_00476: GEMAOFIL_00476 - hypothetical protein, at 540,851 to 541,282 _00476 GEMAOFIL_00477: GEMAOFIL_00477 - hypothetical protein, at 541,393 to 541,875 _00477 GEMAOFIL_00478: GEMAOFIL_00478 - Protein YdeP, at 542,083 to 544,431 _00478 GEMAOFIL_00479: GEMAOFIL_00479 - Sulfur carrier protein FdhD, at 544,428 to 545,267 _00479 GEMAOFIL_00480: GEMAOFIL_00480 - HTH-type transcriptional regulator HdfR, at 545,365 to 546,252 _00480 Position (kb) 542 543 544 545Strain fitness (log2 ratio) -1 0 1at 541.139 kb on + strand, within GEMAOFIL_00476at 541.140 kb on - strand, within GEMAOFIL_00476at 541.140 kb on - strand, within GEMAOFIL_00476at 541.281 kb on - strandat 541.314 kb on - strandat 541.364 kb on - strandat 541.388 kb on - strandat 541.464 kb on - strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.533 kb on - strand, within GEMAOFIL_00477at 541.768 kb on + strand, within GEMAOFIL_00477at 541.792 kb on + strand, within GEMAOFIL_00477at 541.882 kb on - strandat 541.936 kb on - strandat 541.936 kb on - strandat 542.161 kb on - strandat 542.161 kb on - strandat 542.214 kb on - strandat 542.217 kb on - strandat 542.217 kb on - strandat 542.242 kb on - strandat 542.260 kb on - strandat 542.260 kb on - strandat 542.368 kb on + strand, within GEMAOFIL_00478at 542.369 kb on - strand, within GEMAOFIL_00478at 542.369 kb on - strand, within GEMAOFIL_00478at 542.414 kb on + strand, within GEMAOFIL_00478at 542.415 kb on - strand, within GEMAOFIL_00478at 542.430 kb on - strand, within GEMAOFIL_00478at 542.581 kb on - strand, within GEMAOFIL_00478at 542.729 kb on - strand, within GEMAOFIL_00478at 543.183 kb on + strand, within GEMAOFIL_00478at 543.183 kb on + strand, within GEMAOFIL_00478at 543.339 kb on - strand, within GEMAOFIL_00478at 543.339 kb on - strand, within GEMAOFIL_00478at 543.428 kb on + strand, within GEMAOFIL_00478at 543.904 kb on + strand, within GEMAOFIL_00478at 543.905 kb on - strand, within GEMAOFIL_00478at 543.915 kb on - strand, within GEMAOFIL_00478at 543.953 kb on + strand, within GEMAOFIL_00478at 544.089 kb on - strand, within GEMAOFIL_00478at 544.379 kb on + strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.389 kb on - strandat 544.457 kb on - strandat 544.457 kb on - strandat 544.674 kb on - strand, within GEMAOFIL_00479at 544.736 kb on + strand, within GEMAOFIL_00479at 544.766 kb on - strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.015 kb on - strand, within GEMAOFIL_00479at 545.018 kb on + strand, within GEMAOFIL_00479at 545.120 kb on + strand, within GEMAOFIL_00479at 545.123 kb on - strand, within GEMAOFIL_00479at 545.191 kb on + strandat 545.192 kb on - strandat 545.197 kb on + strandat 545.198 kb on - strandat 545.300 kb on + strandat 545.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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541,139 + GEMAOFIL_00476 0.67 +0.4
541,140 - GEMAOFIL_00476 0.67 -1.2
541,140 - GEMAOFIL_00476 0.67 -0.0
541,281 - +0.7
541,314 - +0.0
541,364 - -1.1
541,388 - +0.0
541,464 - GEMAOFIL_00477 0.15 -0.1
541,532 + GEMAOFIL_00477 0.29 +0.3
541,532 + GEMAOFIL_00477 0.29 -0.1
541,532 + GEMAOFIL_00477 0.29 -0.5
541,533 - GEMAOFIL_00477 0.29 -0.1
541,768 + GEMAOFIL_00477 0.78 -0.3
541,792 + GEMAOFIL_00477 0.83 +0.0
541,882 - +0.2
541,936 - +0.4
541,936 - +0.4
542,161 - -0.6
542,161 - +0.6
542,214 - +0.2
542,217 - -0.1
542,217 - +0.4
542,242 - -1.2
542,260 - -0.1
542,260 - -0.1
542,368 + GEMAOFIL_00478 0.12 -1.2
542,369 - GEMAOFIL_00478 0.12 -0.0
542,369 - GEMAOFIL_00478 0.12 -1.1
542,414 + GEMAOFIL_00478 0.14 -0.1
542,415 - GEMAOFIL_00478 0.14 +0.1
542,430 - GEMAOFIL_00478 0.15 +0.4
542,581 - GEMAOFIL_00478 0.21 -1.2
542,729 - GEMAOFIL_00478 0.28 +1.7
543,183 + GEMAOFIL_00478 0.47 +0.6
543,183 + GEMAOFIL_00478 0.47 -0.5
543,339 - GEMAOFIL_00478 0.53 +0.6
543,339 - GEMAOFIL_00478 0.53 -0.1
543,428 + GEMAOFIL_00478 0.57 +0.1
543,904 + GEMAOFIL_00478 0.78 -0.9
543,905 - GEMAOFIL_00478 0.78 -0.4
543,915 - GEMAOFIL_00478 0.78 -0.5
543,953 + GEMAOFIL_00478 0.80 +0.4
544,089 - GEMAOFIL_00478 0.85 +0.3
544,379 + -0.3
544,380 - +1.4
544,380 - +0.2
544,380 - -0.3
544,380 - +0.8
544,389 - -0.1
544,457 - -0.1
544,457 - +0.1
544,674 - GEMAOFIL_00479 0.29 -0.1
544,736 + GEMAOFIL_00479 0.37 -0.3
544,766 - GEMAOFIL_00479 0.40 +0.2
545,014 + GEMAOFIL_00479 0.70 +0.0
545,014 + GEMAOFIL_00479 0.70 +0.6
545,014 + GEMAOFIL_00479 0.70 +0.1
545,014 + GEMAOFIL_00479 0.70 +0.4
545,015 - GEMAOFIL_00479 0.70 -0.7
545,018 + GEMAOFIL_00479 0.70 -0.3
545,120 + GEMAOFIL_00479 0.82 +0.1
545,123 - GEMAOFIL_00479 0.83 +0.2
545,191 + +0.0
545,192 - +0.1
545,197 + +0.0
545,198 - -0.2
545,300 + +0.8
545,390 + -0.4

Or see this region's nucleotide sequence