Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00403

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00401 and GEMAOFIL_00402 are separated by 182 nucleotidesGEMAOFIL_00402 and GEMAOFIL_00403 are separated by 370 nucleotidesGEMAOFIL_00403 and GEMAOFIL_00404 are separated by 183 nucleotides GEMAOFIL_00401: GEMAOFIL_00401 - HTH-type transcriptional activator RhaS, at 463,611 to 464,387 _00401 GEMAOFIL_00402: GEMAOFIL_00402 - tRNA-Arg, at 464,570 to 464,646 _00402 GEMAOFIL_00403: GEMAOFIL_00403 - Glutarate-semialdehyde dehydrogenase, at 465,017 to 466,459 _00403 GEMAOFIL_00404: GEMAOFIL_00404 - 5-aminovalerate aminotransferase DavT, at 466,643 to 467,920 _00404 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1at 464.048 kb on - strand, within GEMAOFIL_00401at 464.064 kb on + strand, within GEMAOFIL_00401at 464.064 kb on + strand, within GEMAOFIL_00401at 464.183 kb on + strand, within GEMAOFIL_00401at 464.198 kb on + strand, within GEMAOFIL_00401at 464.198 kb on + strand, within GEMAOFIL_00401at 464.299 kb on - strand, within GEMAOFIL_00401at 464.299 kb on - strand, within GEMAOFIL_00401at 464.341 kb on + strandat 464.341 kb on + strandat 464.350 kb on - strandat 464.566 kb on + strandat 464.566 kb on + strandat 464.566 kb on + strandat 464.567 kb on - strandat 464.567 kb on - strandat 464.567 kb on - strandat 464.567 kb on - strandat 464.567 kb on - strandat 464.568 kb on + strandat 464.568 kb on + strandat 464.569 kb on - strandat 464.569 kb on - strandat 464.569 kb on - strandat 464.665 kb on - strandat 464.848 kb on + strandat 464.848 kb on + strandat 464.849 kb on - strandat 464.849 kb on - strandat 464.849 kb on - strandat 464.849 kb on - strandat 464.849 kb on - strandat 464.909 kb on + strandat 464.974 kb on + strandat 464.974 kb on + strandat 464.974 kb on + strandat 465.003 kb on + strandat 465.396 kb on - strand, within GEMAOFIL_00403at 465.697 kb on + strand, within GEMAOFIL_00403at 465.902 kb on + strand, within GEMAOFIL_00403at 465.903 kb on - strand, within GEMAOFIL_00403at 465.903 kb on - strand, within GEMAOFIL_00403at 466.072 kb on + strand, within GEMAOFIL_00403at 466.124 kb on - strand, within GEMAOFIL_00403at 466.259 kb on + strand, within GEMAOFIL_00403at 466.259 kb on + strand, within GEMAOFIL_00403at 466.260 kb on - strand, within GEMAOFIL_00403at 466.265 kb on + strand, within GEMAOFIL_00403at 466.266 kb on - strand, within GEMAOFIL_00403at 466.314 kb on - strand, within GEMAOFIL_00403at 466.425 kb on - strandat 466.425 kb on - strandat 466.439 kb on + strandat 466.439 kb on + strandat 466.439 kb on + strandat 466.439 kb on + strandat 466.440 kb on - strandat 466.440 kb on - strandat 466.457 kb on + strandat 466.457 kb on + strandat 466.457 kb on + strandat 466.458 kb on - strandat 466.458 kb on - strandat 466.458 kb on - strandat 466.458 kb on - strandat 466.481 kb on - strandat 466.530 kb on - strandat 466.599 kb on - strandat 466.643 kb on - strandat 466.689 kb on + strandat 466.901 kb on + strand, within GEMAOFIL_00404at 466.901 kb on + strand, within GEMAOFIL_00404at 466.901 kb on + strand, within GEMAOFIL_00404at 466.902 kb on - strand, within GEMAOFIL_00404at 466.902 kb on - strand, within GEMAOFIL_00404at 467.109 kb on - strand, within GEMAOFIL_00404at 467.242 kb on + strand, within GEMAOFIL_00404at 467.288 kb on + strand, within GEMAOFIL_00404

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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464,048 - GEMAOFIL_00401 0.56 +0.7
464,064 + GEMAOFIL_00401 0.58 -0.7
464,064 + GEMAOFIL_00401 0.58 -0.0
464,183 + GEMAOFIL_00401 0.74 +0.2
464,198 + GEMAOFIL_00401 0.76 +0.2
464,198 + GEMAOFIL_00401 0.76 -0.4
464,299 - GEMAOFIL_00401 0.89 +0.2
464,299 - GEMAOFIL_00401 0.89 -0.1
464,341 + +0.8
464,341 + -0.3
464,350 - -0.1
464,566 + -0.6
464,566 + +0.4
464,566 + -0.1
464,567 - -0.4
464,567 - -0.2
464,567 - -2.2
464,567 - +0.1
464,567 - -0.0
464,568 + -1.0
464,568 + +0.3
464,569 - -0.3
464,569 - -0.2
464,569 - +0.6
464,665 - -0.4
464,848 + +0.2
464,848 + +0.4
464,849 - -0.4
464,849 - -0.3
464,849 - -0.3
464,849 - +0.3
464,849 - -0.0
464,909 + -0.5
464,974 + +0.5
464,974 + -0.1
464,974 + -1.2
465,003 + +0.2
465,396 - GEMAOFIL_00403 0.26 +0.3
465,697 + GEMAOFIL_00403 0.47 +0.8
465,902 + GEMAOFIL_00403 0.61 +0.1
465,903 - GEMAOFIL_00403 0.61 +0.3
465,903 - GEMAOFIL_00403 0.61 +0.1
466,072 + GEMAOFIL_00403 0.73 -0.3
466,124 - GEMAOFIL_00403 0.77 +0.1
466,259 + GEMAOFIL_00403 0.86 -0.7
466,259 + GEMAOFIL_00403 0.86 -0.1
466,260 - GEMAOFIL_00403 0.86 +0.0
466,265 + GEMAOFIL_00403 0.86 -0.2
466,266 - GEMAOFIL_00403 0.87 +0.3
466,314 - GEMAOFIL_00403 0.90 +0.8
466,425 - +0.5
466,425 - -0.1
466,439 + +0.4
466,439 + +0.5
466,439 + +0.5
466,439 + +0.3
466,440 - -0.5
466,440 - +0.2
466,457 + +0.1
466,457 + +0.2
466,457 + -0.8
466,458 - +0.3
466,458 - -0.0
466,458 - -2.2
466,458 - -0.6
466,481 - -0.9
466,530 - -0.0
466,599 - -0.4
466,643 - -0.6
466,689 + -0.0
466,901 + GEMAOFIL_00404 0.20 -0.1
466,901 + GEMAOFIL_00404 0.20 -1.3
466,901 + GEMAOFIL_00404 0.20 +0.6
466,902 - GEMAOFIL_00404 0.20 +0.5
466,902 - GEMAOFIL_00404 0.20 +0.8
467,109 - GEMAOFIL_00404 0.36 -0.8
467,242 + GEMAOFIL_00404 0.47 -0.3
467,288 + GEMAOFIL_00404 0.50 -1.1

Or see this region's nucleotide sequence