Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00013

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00011 and GEMAOFIL_00012 are separated by 0 nucleotidesGEMAOFIL_00012 and GEMAOFIL_00013 are separated by 167 nucleotidesGEMAOFIL_00013 and GEMAOFIL_00014 are separated by 125 nucleotides GEMAOFIL_00011: GEMAOFIL_00011 - Gamma-glutamylputrescine oxidoreductase, at 9,966 to 11,258 _00011 GEMAOFIL_00012: GEMAOFIL_00012 - hypothetical protein, at 11,259 to 11,483 _00012 GEMAOFIL_00013: GEMAOFIL_00013 - 2-aminoadipate transaminase, at 11,651 to 13,075 _00013 GEMAOFIL_00014: GEMAOFIL_00014 - Cardiolipin synthase C, at 13,201 to 14,706 _00014 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 10.686 kb on + strand, within GEMAOFIL_00011at 10.686 kb on + strand, within GEMAOFIL_00011at 10.686 kb on + strand, within GEMAOFIL_00011at 10.740 kb on + strand, within GEMAOFIL_00011at 10.740 kb on + strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.741 kb on - strand, within GEMAOFIL_00011at 10.833 kb on + strand, within GEMAOFIL_00011at 10.833 kb on + strand, within GEMAOFIL_00011at 10.833 kb on + strand, within GEMAOFIL_00011at 10.861 kb on + strand, within GEMAOFIL_00011at 10.885 kb on - strand, within GEMAOFIL_00011at 10.885 kb on - strand, within GEMAOFIL_00011at 10.917 kb on + strand, within GEMAOFIL_00011at 10.917 kb on + strand, within GEMAOFIL_00011at 10.917 kb on + strand, within GEMAOFIL_00011at 10.918 kb on - strand, within GEMAOFIL_00011at 10.918 kb on - strand, within GEMAOFIL_00011at 10.918 kb on - strand, within GEMAOFIL_00011at 10.918 kb on - strand, within GEMAOFIL_00011at 10.919 kb on + strand, within GEMAOFIL_00011at 10.919 kb on + strand, within GEMAOFIL_00011at 10.919 kb on + strand, within GEMAOFIL_00011at 10.920 kb on - strand, within GEMAOFIL_00011at 10.920 kb on - strand, within GEMAOFIL_00011at 10.920 kb on - strand, within GEMAOFIL_00011at 10.963 kb on + strand, within GEMAOFIL_00011at 11.052 kb on + strand, within GEMAOFIL_00011at 11.053 kb on - strand, within GEMAOFIL_00011at 11.053 kb on - strand, within GEMAOFIL_00011at 11.055 kb on + strand, within GEMAOFIL_00011at 11.055 kb on + strand, within GEMAOFIL_00011at 11.055 kb on + strand, within GEMAOFIL_00011at 11.451 kb on + strand, within GEMAOFIL_00012at 11.452 kb on - strand, within GEMAOFIL_00012at 11.566 kb on + strandat 11.569 kb on + strandat 11.569 kb on + strandat 11.583 kb on + strandat 11.584 kb on - strandat 11.584 kb on - strandat 11.584 kb on - strandat 11.584 kb on - strandat 11.584 kb on - strandat 11.626 kb on + strandat 11.626 kb on + strandat 11.626 kb on + strandat 11.627 kb on - strandat 11.660 kb on + strandat 11.660 kb on + strandat 11.666 kb on - strandat 11.708 kb on + strandat 11.708 kb on + strandat 11.736 kb on + strandat 11.751 kb on + strandat 11.790 kb on - strandat 11.807 kb on - strand, within GEMAOFIL_00013at 11.841 kb on - strand, within GEMAOFIL_00013at 11.883 kb on + strand, within GEMAOFIL_00013at 11.970 kb on + strand, within GEMAOFIL_00013at 11.971 kb on - strand, within GEMAOFIL_00013at 11.997 kb on + strand, within GEMAOFIL_00013at 11.997 kb on + strand, within GEMAOFIL_00013at 11.997 kb on + strand, within GEMAOFIL_00013at 11.998 kb on - strand, within GEMAOFIL_00013at 11.998 kb on - strand, within GEMAOFIL_00013at 11.998 kb on - strand, within GEMAOFIL_00013at 11.998 kb on - strand, within GEMAOFIL_00013at 12.071 kb on + strand, within GEMAOFIL_00013at 12.071 kb on + strand, within GEMAOFIL_00013at 12.072 kb on - strand, within GEMAOFIL_00013at 12.083 kb on - strand, within GEMAOFIL_00013at 12.094 kb on + strand, within GEMAOFIL_00013at 12.094 kb on + strand, within GEMAOFIL_00013at 12.094 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.416 kb on + strand, within GEMAOFIL_00013at 12.417 kb on - strand, within GEMAOFIL_00013at 12.417 kb on - strand, within GEMAOFIL_00013at 12.417 kb on - strand, within GEMAOFIL_00013at 12.417 kb on - strand, within GEMAOFIL_00013at 12.498 kb on - strand, within GEMAOFIL_00013at 12.498 kb on - strand, within GEMAOFIL_00013at 12.512 kb on + strand, within GEMAOFIL_00013at 12.662 kb on + strand, within GEMAOFIL_00013at 12.662 kb on + strand, within GEMAOFIL_00013at 12.662 kb on + strand, within GEMAOFIL_00013at 12.663 kb on - strand, within GEMAOFIL_00013at 12.663 kb on - strand, within GEMAOFIL_00013at 12.663 kb on - strand, within GEMAOFIL_00013at 12.663 kb on - strand, within GEMAOFIL_00013at 12.772 kb on + strand, within GEMAOFIL_00013at 12.807 kb on - strand, within GEMAOFIL_00013at 12.850 kb on + strand, within GEMAOFIL_00013at 12.850 kb on + strand, within GEMAOFIL_00013at 12.850 kb on + strand, within GEMAOFIL_00013at 12.850 kb on + strand, within GEMAOFIL_00013at 12.921 kb on + strand, within GEMAOFIL_00013at 12.921 kb on + strand, within GEMAOFIL_00013at 12.921 kb on + strand, within GEMAOFIL_00013at 12.921 kb on + strand, within GEMAOFIL_00013at 12.922 kb on - strand, within GEMAOFIL_00013at 12.922 kb on - strand, within GEMAOFIL_00013at 12.922 kb on - strand, within GEMAOFIL_00013at 12.963 kb on - strandat 12.986 kb on + strandat 12.986 kb on + strandat 12.986 kb on + strandat 12.986 kb on + strandat 12.987 kb on - strandat 12.987 kb on - strandat 12.987 kb on - strandat 13.099 kb on + strandat 13.100 kb on - strandat 13.206 kb on + strandat 13.207 kb on - strandat 13.286 kb on - strandat 13.387 kb on + strand, within GEMAOFIL_00014at 13.390 kb on + strand, within GEMAOFIL_00014at 13.390 kb on + strand, within GEMAOFIL_00014at 13.391 kb on - strand, within GEMAOFIL_00014at 13.391 kb on - strand, within GEMAOFIL_00014at 13.391 kb on - strand, within GEMAOFIL_00014at 13.391 kb on - strand, within GEMAOFIL_00014at 13.708 kb on + strand, within GEMAOFIL_00014at 13.708 kb on + strand, within GEMAOFIL_00014at 13.708 kb on + strand, within GEMAOFIL_00014at 13.708 kb on + strand, within GEMAOFIL_00014at 13.708 kb on + strand, within GEMAOFIL_00014at 13.709 kb on - strand, within GEMAOFIL_00014at 13.709 kb on - strand, within GEMAOFIL_00014at 13.709 kb on - strand, within GEMAOFIL_00014at 13.801 kb on + strand, within GEMAOFIL_00014at 13.802 kb on - strand, within GEMAOFIL_00014at 13.933 kb on + strand, within GEMAOFIL_00014at 13.933 kb on + strand, within GEMAOFIL_00014at 13.933 kb on + strand, within GEMAOFIL_00014

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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10,686 + GEMAOFIL_00011 0.56 +0.5
10,686 + GEMAOFIL_00011 0.56 +0.6
10,686 + GEMAOFIL_00011 0.56 +0.6
10,740 + GEMAOFIL_00011 0.60 -0.5
10,740 + GEMAOFIL_00011 0.60 +2.3
10,741 - GEMAOFIL_00011 0.60 +0.8
10,741 - GEMAOFIL_00011 0.60 -0.3
10,741 - GEMAOFIL_00011 0.60 +0.2
10,741 - GEMAOFIL_00011 0.60 -0.1
10,741 - GEMAOFIL_00011 0.60 -0.6
10,741 - GEMAOFIL_00011 0.60 +0.2
10,833 + GEMAOFIL_00011 0.67 +0.1
10,833 + GEMAOFIL_00011 0.67 -0.2
10,833 + GEMAOFIL_00011 0.67 +0.3
10,861 + GEMAOFIL_00011 0.69 -0.1
10,885 - GEMAOFIL_00011 0.71 +0.6
10,885 - GEMAOFIL_00011 0.71 +0.6
10,917 + GEMAOFIL_00011 0.74 -0.0
10,917 + GEMAOFIL_00011 0.74 +0.4
10,917 + GEMAOFIL_00011 0.74 -1.3
10,918 - GEMAOFIL_00011 0.74 -0.2
10,918 - GEMAOFIL_00011 0.74 +0.4
10,918 - GEMAOFIL_00011 0.74 +0.8
10,918 - GEMAOFIL_00011 0.74 +0.1
10,919 + GEMAOFIL_00011 0.74 -0.3
10,919 + GEMAOFIL_00011 0.74 +0.4
10,919 + GEMAOFIL_00011 0.74 +1.3
10,920 - GEMAOFIL_00011 0.74 +0.0
10,920 - GEMAOFIL_00011 0.74 +0.4
10,920 - GEMAOFIL_00011 0.74 -0.6
10,963 + GEMAOFIL_00011 0.77 -1.0
11,052 + GEMAOFIL_00011 0.84 -0.7
11,053 - GEMAOFIL_00011 0.84 +0.2
11,053 - GEMAOFIL_00011 0.84 +0.0
11,055 + GEMAOFIL_00011 0.84 +0.2
11,055 + GEMAOFIL_00011 0.84 -0.2
11,055 + GEMAOFIL_00011 0.84 -0.5
11,451 + GEMAOFIL_00012 0.85 +0.4
11,452 - GEMAOFIL_00012 0.86 -1.4
11,566 + +0.6
11,569 + -0.3
11,569 + +1.0
11,583 + -0.1
11,584 - -1.0
11,584 - +0.9
11,584 - -0.1
11,584 - +0.8
11,584 - -0.0
11,626 + -0.2
11,626 + +0.6
11,626 + +0.6
11,627 - +1.1
11,660 + +0.2
11,660 + -2.4
11,666 - -0.3
11,708 + +0.3
11,708 + +0.1
11,736 + -0.5
11,751 + +0.2
11,790 - +0.3
11,807 - GEMAOFIL_00013 0.11 +0.2
11,841 - GEMAOFIL_00013 0.13 +0.8
11,883 + GEMAOFIL_00013 0.16 -0.8
11,970 + GEMAOFIL_00013 0.22 +0.8
11,971 - GEMAOFIL_00013 0.22 -0.1
11,997 + GEMAOFIL_00013 0.24 +0.3
11,997 + GEMAOFIL_00013 0.24 -0.3
11,997 + GEMAOFIL_00013 0.24 +0.0
11,998 - GEMAOFIL_00013 0.24 +0.3
11,998 - GEMAOFIL_00013 0.24 -0.1
11,998 - GEMAOFIL_00013 0.24 +0.5
11,998 - GEMAOFIL_00013 0.24 -1.4
12,071 + GEMAOFIL_00013 0.29 -0.0
12,071 + GEMAOFIL_00013 0.29 -0.6
12,072 - GEMAOFIL_00013 0.30 +0.0
12,083 - GEMAOFIL_00013 0.30 +0.8
12,094 + GEMAOFIL_00013 0.31 +0.8
12,094 + GEMAOFIL_00013 0.31 -0.7
12,094 + GEMAOFIL_00013 0.31 -0.0
12,416 + GEMAOFIL_00013 0.54 -0.3
12,416 + GEMAOFIL_00013 0.54 +0.6
12,416 + GEMAOFIL_00013 0.54 -0.3
12,416 + GEMAOFIL_00013 0.54 -0.4
12,416 + GEMAOFIL_00013 0.54 -0.2
12,416 + GEMAOFIL_00013 0.54 -1.0
12,416 + GEMAOFIL_00013 0.54 -0.4
12,417 - GEMAOFIL_00013 0.54 +0.8
12,417 - GEMAOFIL_00013 0.54 -0.2
12,417 - GEMAOFIL_00013 0.54 -0.0
12,417 - GEMAOFIL_00013 0.54 +0.3
12,498 - GEMAOFIL_00013 0.59 +0.7
12,498 - GEMAOFIL_00013 0.59 -0.6
12,512 + GEMAOFIL_00013 0.60 +0.1
12,662 + GEMAOFIL_00013 0.71 -0.6
12,662 + GEMAOFIL_00013 0.71 +0.3
12,662 + GEMAOFIL_00013 0.71 +0.2
12,663 - GEMAOFIL_00013 0.71 +0.4
12,663 - GEMAOFIL_00013 0.71 -0.4
12,663 - GEMAOFIL_00013 0.71 -0.3
12,663 - GEMAOFIL_00013 0.71 -0.4
12,772 + GEMAOFIL_00013 0.79 +0.7
12,807 - GEMAOFIL_00013 0.81 -0.8
12,850 + GEMAOFIL_00013 0.84 +0.2
12,850 + GEMAOFIL_00013 0.84 -1.1
12,850 + GEMAOFIL_00013 0.84 +0.3
12,850 + GEMAOFIL_00013 0.84 -0.6
12,921 + GEMAOFIL_00013 0.89 -1.3
12,921 + GEMAOFIL_00013 0.89 -0.4
12,921 + GEMAOFIL_00013 0.89 +0.1
12,921 + GEMAOFIL_00013 0.89 +1.5
12,922 - GEMAOFIL_00013 0.89 +0.9
12,922 - GEMAOFIL_00013 0.89 -1.0
12,922 - GEMAOFIL_00013 0.89 -0.7
12,963 - -0.7
12,986 + -0.0
12,986 + +0.2
12,986 + +1.4
12,986 + +0.2
12,987 - -0.2
12,987 - +0.5
12,987 - +1.1
13,099 + +0.3
13,100 - +0.1
13,206 + +0.2
13,207 - -0.3
13,286 - -0.6
13,387 + GEMAOFIL_00014 0.12 -0.4
13,390 + GEMAOFIL_00014 0.13 +0.0
13,390 + GEMAOFIL_00014 0.13 -0.5
13,391 - GEMAOFIL_00014 0.13 +0.6
13,391 - GEMAOFIL_00014 0.13 +0.2
13,391 - GEMAOFIL_00014 0.13 +0.5
13,391 - GEMAOFIL_00014 0.13 -0.2
13,708 + GEMAOFIL_00014 0.34 -0.0
13,708 + GEMAOFIL_00014 0.34 -0.2
13,708 + GEMAOFIL_00014 0.34 -0.5
13,708 + GEMAOFIL_00014 0.34 +0.3
13,708 + GEMAOFIL_00014 0.34 -0.3
13,709 - GEMAOFIL_00014 0.34 +0.4
13,709 - GEMAOFIL_00014 0.34 +0.6
13,709 - GEMAOFIL_00014 0.34 +0.2
13,801 + GEMAOFIL_00014 0.40 -0.5
13,802 - GEMAOFIL_00014 0.40 +0.8
13,933 + GEMAOFIL_00014 0.49 +0.3
13,933 + GEMAOFIL_00014 0.49 -0.2
13,933 + GEMAOFIL_00014 0.49 +0.1

Or see this region's nucleotide sequence