Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04700 and GEMAOFIL_04701 are separated by 31 nucleotides GEMAOFIL_04701 and GEMAOFIL_04702 overlap by 1 nucleotides
GEMAOFIL_04700: GEMAOFIL_04700 - hypothetical protein, at 5,180,687 to 5,182,126
_04700
GEMAOFIL_04701: GEMAOFIL_04701 - hypothetical protein, at 5,182,158 to 5,183,222
_04701
GEMAOFIL_04702: GEMAOFIL_04702 - hypothetical protein, at 5,183,222 to 5,184,322
_04702
Position (kb) 5182
5183
5184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5181.545 kb on - strand, within GEMAOFIL_04700 at 5181.545 kb on - strand, within GEMAOFIL_04700 at 5181.655 kb on + strand, within GEMAOFIL_04700 at 5181.781 kb on + strand, within GEMAOFIL_04700 at 5181.980 kb on - strand, within GEMAOFIL_04700 at 5182.123 kb on - strand at 5182.124 kb on + strand at 5182.125 kb on - strand at 5182.125 kb on - strand at 5182.140 kb on + strand at 5182.140 kb on + strand at 5182.141 kb on - strand at 5182.279 kb on - strand, within GEMAOFIL_04701 at 5182.279 kb on - strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.584 kb on + strand, within GEMAOFIL_04701 at 5182.585 kb on - strand, within GEMAOFIL_04701 at 5182.585 kb on - strand, within GEMAOFIL_04701 at 5182.585 kb on - strand, within GEMAOFIL_04701 at 5182.585 kb on - strand, within GEMAOFIL_04701 at 5182.585 kb on - strand, within GEMAOFIL_04701 at 5182.798 kb on + strand, within GEMAOFIL_04701 at 5183.127 kb on + strand at 5183.202 kb on - strand at 5183.360 kb on + strand, within GEMAOFIL_04702 at 5183.360 kb on + strand, within GEMAOFIL_04702 at 5183.360 kb on + strand, within GEMAOFIL_04702 at 5183.361 kb on - strand, within GEMAOFIL_04702 at 5183.493 kb on - strand, within GEMAOFIL_04702 at 5183.533 kb on + strand, within GEMAOFIL_04702 at 5183.534 kb on - strand, within GEMAOFIL_04702 at 5183.534 kb on - strand, within GEMAOFIL_04702 at 5183.558 kb on + strand, within GEMAOFIL_04702 at 5183.559 kb on - strand, within GEMAOFIL_04702 at 5183.598 kb on - strand, within GEMAOFIL_04702 at 5183.648 kb on + strand, within GEMAOFIL_04702 at 5183.648 kb on + strand, within GEMAOFIL_04702 at 5183.649 kb on - strand, within GEMAOFIL_04702 at 5183.651 kb on - strand, within GEMAOFIL_04702 at 5183.651 kb on - strand, within GEMAOFIL_04702 at 5183.651 kb on - strand, within GEMAOFIL_04702 at 5184.121 kb on + strand, within GEMAOFIL_04702 at 5184.121 kb on + strand, within GEMAOFIL_04702 at 5184.130 kb on + strand, within GEMAOFIL_04702
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,181,545 - GEMAOFIL_04700 0.60 -0.6 5,181,545 - GEMAOFIL_04700 0.60 +1.0 5,181,655 + GEMAOFIL_04700 0.67 -0.6 5,181,781 + GEMAOFIL_04700 0.76 -0.2 5,181,980 - GEMAOFIL_04700 0.90 +0.1 5,182,123 - -0.6 5,182,124 + +0.7 5,182,125 - -0.0 5,182,125 - -0.6 5,182,140 + -1.6 5,182,140 + -0.0 5,182,141 - +0.4 5,182,279 - GEMAOFIL_04701 0.11 -0.3 5,182,279 - GEMAOFIL_04701 0.11 -0.7 5,182,584 + GEMAOFIL_04701 0.40 -0.0 5,182,584 + GEMAOFIL_04701 0.40 +0.3 5,182,584 + GEMAOFIL_04701 0.40 -2.3 5,182,584 + GEMAOFIL_04701 0.40 -0.4 5,182,584 + GEMAOFIL_04701 0.40 -0.2 5,182,584 + GEMAOFIL_04701 0.40 +0.4 5,182,585 - GEMAOFIL_04701 0.40 -0.0 5,182,585 - GEMAOFIL_04701 0.40 +0.4 5,182,585 - GEMAOFIL_04701 0.40 -0.3 5,182,585 - GEMAOFIL_04701 0.40 +0.3 5,182,585 - GEMAOFIL_04701 0.40 -0.6 5,182,798 + GEMAOFIL_04701 0.60 +0.8 5,183,127 + +1.1 5,183,202 - +0.1 5,183,360 + GEMAOFIL_04702 0.13 -0.2 5,183,360 + GEMAOFIL_04702 0.13 +0.4 5,183,360 + GEMAOFIL_04702 0.13 -2.5 5,183,361 - GEMAOFIL_04702 0.13 +2.0 5,183,493 - GEMAOFIL_04702 0.25 +1.2 5,183,533 + GEMAOFIL_04702 0.28 -0.4 5,183,534 - GEMAOFIL_04702 0.28 -0.3 5,183,534 - GEMAOFIL_04702 0.28 -0.7 5,183,558 + GEMAOFIL_04702 0.31 -0.3 5,183,559 - GEMAOFIL_04702 0.31 -0.4 5,183,598 - GEMAOFIL_04702 0.34 -2.0 5,183,648 + GEMAOFIL_04702 0.39 +0.3 5,183,648 + GEMAOFIL_04702 0.39 -0.6 5,183,649 - GEMAOFIL_04702 0.39 +0.1 5,183,651 - GEMAOFIL_04702 0.39 -0.1 5,183,651 - GEMAOFIL_04702 0.39 +0.1 5,183,651 - GEMAOFIL_04702 0.39 -1.5 5,184,121 + GEMAOFIL_04702 0.82 +0.1 5,184,121 + GEMAOFIL_04702 0.82 -0.3 5,184,130 + GEMAOFIL_04702 0.82 -1.4
Or see this region's nucleotide sequence