Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00401 and GEMAOFIL_00402 are separated by 182 nucleotides GEMAOFIL_00402 and GEMAOFIL_00403 are separated by 370 nucleotides GEMAOFIL_00403 and GEMAOFIL_00404 are separated by 183 nucleotides
GEMAOFIL_00401: GEMAOFIL_00401 - HTH-type transcriptional activator RhaS, at 463,611 to 464,387
_00401
GEMAOFIL_00402: GEMAOFIL_00402 - tRNA-Arg, at 464,570 to 464,646
_00402
GEMAOFIL_00403: GEMAOFIL_00403 - Glutarate-semialdehyde dehydrogenase, at 465,017 to 466,459
_00403
GEMAOFIL_00404: GEMAOFIL_00404 - 5-aminovalerate aminotransferase DavT, at 466,643 to 467,920
_00404
Position (kb) 465
466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.048 kb on - strand, within GEMAOFIL_00401 at 464.064 kb on + strand, within GEMAOFIL_00401 at 464.064 kb on + strand, within GEMAOFIL_00401 at 464.183 kb on + strand, within GEMAOFIL_00401 at 464.198 kb on + strand, within GEMAOFIL_00401 at 464.198 kb on + strand, within GEMAOFIL_00401 at 464.299 kb on - strand, within GEMAOFIL_00401 at 464.299 kb on - strand, within GEMAOFIL_00401 at 464.341 kb on + strand at 464.341 kb on + strand at 464.350 kb on - strand at 464.566 kb on + strand at 464.566 kb on + strand at 464.566 kb on + strand at 464.567 kb on - strand at 464.567 kb on - strand at 464.567 kb on - strand at 464.567 kb on - strand at 464.567 kb on - strand at 464.568 kb on + strand at 464.568 kb on + strand at 464.569 kb on - strand at 464.569 kb on - strand at 464.569 kb on - strand at 464.665 kb on - strand at 464.848 kb on + strand at 464.848 kb on + strand at 464.849 kb on - strand at 464.849 kb on - strand at 464.849 kb on - strand at 464.849 kb on - strand at 464.849 kb on - strand at 464.909 kb on + strand at 464.974 kb on + strand at 464.974 kb on + strand at 464.974 kb on + strand at 465.003 kb on + strand at 465.396 kb on - strand, within GEMAOFIL_00403 at 465.697 kb on + strand, within GEMAOFIL_00403 at 465.902 kb on + strand, within GEMAOFIL_00403 at 465.903 kb on - strand, within GEMAOFIL_00403 at 465.903 kb on - strand, within GEMAOFIL_00403 at 466.072 kb on + strand, within GEMAOFIL_00403 at 466.124 kb on - strand, within GEMAOFIL_00403 at 466.259 kb on + strand, within GEMAOFIL_00403 at 466.259 kb on + strand, within GEMAOFIL_00403 at 466.260 kb on - strand, within GEMAOFIL_00403 at 466.265 kb on + strand, within GEMAOFIL_00403 at 466.266 kb on - strand, within GEMAOFIL_00403 at 466.314 kb on - strand, within GEMAOFIL_00403 at 466.425 kb on - strand at 466.425 kb on - strand at 466.439 kb on + strand at 466.439 kb on + strand at 466.439 kb on + strand at 466.439 kb on + strand at 466.440 kb on - strand at 466.440 kb on - strand at 466.457 kb on + strand at 466.457 kb on + strand at 466.457 kb on + strand at 466.458 kb on - strand at 466.458 kb on - strand at 466.458 kb on - strand at 466.458 kb on - strand at 466.481 kb on - strand at 466.530 kb on - strand at 466.599 kb on - strand at 466.643 kb on - strand at 466.689 kb on + strand at 466.901 kb on + strand, within GEMAOFIL_00404 at 466.901 kb on + strand, within GEMAOFIL_00404 at 466.901 kb on + strand, within GEMAOFIL_00404 at 466.902 kb on - strand, within GEMAOFIL_00404 at 466.902 kb on - strand, within GEMAOFIL_00404 at 467.109 kb on - strand, within GEMAOFIL_00404 at 467.242 kb on + strand, within GEMAOFIL_00404 at 467.288 kb on + strand, within GEMAOFIL_00404
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 464,048 - GEMAOFIL_00401 0.56 +1.9 464,064 + GEMAOFIL_00401 0.58 -0.4 464,064 + GEMAOFIL_00401 0.58 +1.2 464,183 + GEMAOFIL_00401 0.74 +0.0 464,198 + GEMAOFIL_00401 0.76 -0.3 464,198 + GEMAOFIL_00401 0.76 +0.0 464,299 - GEMAOFIL_00401 0.89 -1.0 464,299 - GEMAOFIL_00401 0.89 -0.1 464,341 + -0.0 464,341 + -0.3 464,350 - -0.3 464,566 + -0.3 464,566 + +1.4 464,566 + -0.0 464,567 - -0.5 464,567 - -0.1 464,567 - -0.6 464,567 - +0.2 464,567 - -1.0 464,568 + +0.4 464,568 + +0.6 464,569 - -0.5 464,569 - +0.3 464,569 - +0.4 464,665 - -0.4 464,848 + +0.7 464,848 + +0.3 464,849 - +0.2 464,849 - -0.2 464,849 - +0.4 464,849 - +0.6 464,849 - -0.0 464,909 + +0.9 464,974 + +0.5 464,974 + -0.3 464,974 + -0.8 465,003 + +0.3 465,396 - GEMAOFIL_00403 0.26 -1.7 465,697 + GEMAOFIL_00403 0.47 +0.0 465,902 + GEMAOFIL_00403 0.61 +0.4 465,903 - GEMAOFIL_00403 0.61 +0.2 465,903 - GEMAOFIL_00403 0.61 +0.4 466,072 + GEMAOFIL_00403 0.73 +0.5 466,124 - GEMAOFIL_00403 0.77 +0.3 466,259 + GEMAOFIL_00403 0.86 -0.8 466,259 + GEMAOFIL_00403 0.86 +0.5 466,260 - GEMAOFIL_00403 0.86 -0.6 466,265 + GEMAOFIL_00403 0.86 -0.1 466,266 - GEMAOFIL_00403 0.87 +0.5 466,314 - GEMAOFIL_00403 0.90 +1.2 466,425 - +0.1 466,425 - +0.3 466,439 + -0.3 466,439 + -0.9 466,439 + +0.1 466,439 + +0.3 466,440 - -0.4 466,440 - -0.0 466,457 + +0.0 466,457 + +0.4 466,457 + -0.5 466,458 - +0.4 466,458 - -1.2 466,458 - -3.2 466,458 - -0.3 466,481 - -1.3 466,530 - +0.1 466,599 - -0.2 466,643 - -0.6 466,689 + -0.8 466,901 + GEMAOFIL_00404 0.20 +0.5 466,901 + GEMAOFIL_00404 0.20 -0.7 466,901 + GEMAOFIL_00404 0.20 +0.2 466,902 - GEMAOFIL_00404 0.20 +0.3 466,902 - GEMAOFIL_00404 0.20 +0.2 467,109 - GEMAOFIL_00404 0.36 -0.8 467,242 + GEMAOFIL_00404 0.47 -0.2 467,288 + GEMAOFIL_00404 0.50 +1.0
Or see this region's nucleotide sequence