Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_05104 and GEMAOFIL_05105 overlap by 7 nucleotides GEMAOFIL_05105 and GEMAOFIL_05106 are separated by 99 nucleotides GEMAOFIL_05106 and GEMAOFIL_05107 are separated by 21 nucleotides GEMAOFIL_05107 and GEMAOFIL_05108 overlap by 4 nucleotides
GEMAOFIL_05104: GEMAOFIL_05104 - hypothetical protein, at 5,624,804 to 5,626,120
_05104
GEMAOFIL_05105: GEMAOFIL_05105 - hypothetical protein, at 5,626,114 to 5,626,329
_05105
GEMAOFIL_05106: GEMAOFIL_05106 - hypothetical protein, at 5,626,429 to 5,627,019
_05106
GEMAOFIL_05107: GEMAOFIL_05107 - Inner membrane protein YohK, at 5,627,041 to 5,627,757
_05107
GEMAOFIL_05108: GEMAOFIL_05108 - Holin-like protein CidA, at 5,627,754 to 5,628,107
_05108
Position (kb) 5626
5627
5628 Strain fitness (log2 ratio) -1
0
1
2 at 5625.453 kb on + strand, within GEMAOFIL_05104 at 5625.454 kb on - strand, within GEMAOFIL_05104 at 5625.694 kb on + strand, within GEMAOFIL_05104 at 5625.908 kb on + strand, within GEMAOFIL_05104 at 5625.909 kb on - strand, within GEMAOFIL_05104 at 5626.109 kb on + strand at 5626.109 kb on + strand at 5626.110 kb on - strand at 5626.116 kb on - strand at 5626.205 kb on - strand, within GEMAOFIL_05105 at 5626.229 kb on + strand, within GEMAOFIL_05105 at 5626.229 kb on + strand, within GEMAOFIL_05105 at 5626.366 kb on - strand at 5626.366 kb on - strand at 5626.366 kb on - strand at 5626.408 kb on + strand at 5626.409 kb on - strand at 5626.412 kb on + strand at 5626.412 kb on + strand at 5626.412 kb on + strand at 5626.747 kb on + strand, within GEMAOFIL_05106 at 5626.954 kb on + strand, within GEMAOFIL_05106 at 5627.005 kb on + strand at 5627.019 kb on + strand at 5627.032 kb on - strand at 5627.032 kb on - strand at 5627.272 kb on + strand, within GEMAOFIL_05107 at 5627.272 kb on + strand, within GEMAOFIL_05107 at 5627.272 kb on + strand, within GEMAOFIL_05107 at 5627.272 kb on + strand, within GEMAOFIL_05107 at 5627.273 kb on - strand, within GEMAOFIL_05107 at 5627.445 kb on + strand, within GEMAOFIL_05107 at 5627.446 kb on - strand, within GEMAOFIL_05107 at 5627.492 kb on + strand, within GEMAOFIL_05107 at 5627.570 kb on + strand, within GEMAOFIL_05107 at 5627.678 kb on + strand, within GEMAOFIL_05107 at 5627.679 kb on - strand, within GEMAOFIL_05107 at 5627.881 kb on + strand, within GEMAOFIL_05108
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,625,453 + GEMAOFIL_05104 0.49 +0.4 5,625,454 - GEMAOFIL_05104 0.49 +1.2 5,625,694 + GEMAOFIL_05104 0.68 -0.5 5,625,908 + GEMAOFIL_05104 0.84 +1.1 5,625,909 - GEMAOFIL_05104 0.84 +0.0 5,626,109 + -0.1 5,626,109 + +0.3 5,626,110 - -0.3 5,626,116 - +0.5 5,626,205 - GEMAOFIL_05105 0.42 -0.3 5,626,229 + GEMAOFIL_05105 0.53 -0.2 5,626,229 + GEMAOFIL_05105 0.53 -0.9 5,626,366 - +1.3 5,626,366 - -0.2 5,626,366 - -0.1 5,626,408 + +0.3 5,626,409 - -0.1 5,626,412 + +1.4 5,626,412 + -1.5 5,626,412 + +0.4 5,626,747 + GEMAOFIL_05106 0.54 -0.7 5,626,954 + GEMAOFIL_05106 0.89 +0.5 5,627,005 + +0.6 5,627,019 + -0.1 5,627,032 - +0.8 5,627,032 - -0.5 5,627,272 + GEMAOFIL_05107 0.32 +0.8 5,627,272 + GEMAOFIL_05107 0.32 +0.4 5,627,272 + GEMAOFIL_05107 0.32 -0.2 5,627,272 + GEMAOFIL_05107 0.32 +0.3 5,627,273 - GEMAOFIL_05107 0.32 +0.1 5,627,445 + GEMAOFIL_05107 0.56 +0.6 5,627,446 - GEMAOFIL_05107 0.56 +2.0 5,627,492 + GEMAOFIL_05107 0.63 +1.2 5,627,570 + GEMAOFIL_05107 0.74 +1.4 5,627,678 + GEMAOFIL_05107 0.89 +0.5 5,627,679 - GEMAOFIL_05107 0.89 +0.9 5,627,881 + GEMAOFIL_05108 0.36 +0.8
Or see this region's nucleotide sequence