Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00624 and GEMAOFIL_00625 are separated by 216 nucleotides GEMAOFIL_00625 and GEMAOFIL_00626 overlap by 4 nucleotides GEMAOFIL_00626 and GEMAOFIL_00627 overlap by 4 nucleotides GEMAOFIL_00627 and GEMAOFIL_00628 are separated by 13 nucleotides
GEMAOFIL_00624: GEMAOFIL_00624 - Penicillin-binding protein 1A, at 724,192 to 726,654
_00624
GEMAOFIL_00625: GEMAOFIL_00625 - hypothetical protein, at 726,871 to 727,524
_00625
GEMAOFIL_00626: GEMAOFIL_00626 - hypothetical protein, at 727,521 to 728,075
_00626
GEMAOFIL_00627: GEMAOFIL_00627 - hypothetical protein, at 728,072 to 729,043
_00627
GEMAOFIL_00628: GEMAOFIL_00628 - Type IV pilus biogenesis and competence protein PilQ, at 729,057 to 730,439
_00628
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.528 kb on + strand at 726.528 kb on + strand at 726.534 kb on + strand at 726.534 kb on + strand at 726.535 kb on - strand at 726.564 kb on + strand at 726.565 kb on - strand at 726.687 kb on - strand at 726.736 kb on - strand at 726.736 kb on - strand at 726.843 kb on + strand at 726.876 kb on - strand at 726.973 kb on + strand, within GEMAOFIL_00625 at 726.988 kb on + strand, within GEMAOFIL_00625 at 727.213 kb on + strand, within GEMAOFIL_00625 at 727.222 kb on + strand, within GEMAOFIL_00625 at 727.257 kb on - strand, within GEMAOFIL_00625 at 727.257 kb on - strand, within GEMAOFIL_00625 at 727.295 kb on + strand, within GEMAOFIL_00625 at 727.295 kb on + strand, within GEMAOFIL_00625 at 727.296 kb on - strand, within GEMAOFIL_00625 at 727.475 kb on + strand at 727.475 kb on + strand at 727.475 kb on + strand at 727.475 kb on + strand at 727.476 kb on - strand at 727.476 kb on - strand at 727.476 kb on - strand at 727.476 kb on - strand at 728.314 kb on - strand, within GEMAOFIL_00627 at 728.422 kb on - strand, within GEMAOFIL_00627 at 728.469 kb on - strand, within GEMAOFIL_00627 at 728.469 kb on - strand, within GEMAOFIL_00627 at 728.627 kb on + strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.861 kb on + strand, within GEMAOFIL_00627 at 728.889 kb on + strand, within GEMAOFIL_00627 at 728.890 kb on - strand, within GEMAOFIL_00627 at 728.912 kb on + strand, within GEMAOFIL_00627 at 729.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 726,528 + -1.5 726,528 + -0.5 726,534 + -0.6 726,534 + -1.6 726,535 - +0.0 726,564 + -0.7 726,565 - -1.1 726,687 - -2.5 726,736 - +0.2 726,736 - -0.2 726,843 + +0.6 726,876 - -1.1 726,973 + GEMAOFIL_00625 0.16 +0.1 726,988 + GEMAOFIL_00625 0.18 +2.2 727,213 + GEMAOFIL_00625 0.52 -0.2 727,222 + GEMAOFIL_00625 0.54 -0.3 727,257 - GEMAOFIL_00625 0.59 -0.4 727,257 - GEMAOFIL_00625 0.59 +0.7 727,295 + GEMAOFIL_00625 0.65 +1.3 727,295 + GEMAOFIL_00625 0.65 +0.4 727,296 - GEMAOFIL_00625 0.65 -0.6 727,475 + +0.4 727,475 + +0.3 727,475 + +0.8 727,475 + +0.1 727,476 - -1.5 727,476 - -0.4 727,476 - +0.1 727,476 - +0.3 728,314 - GEMAOFIL_00627 0.25 +0.5 728,422 - GEMAOFIL_00627 0.36 +0.3 728,469 - GEMAOFIL_00627 0.41 +0.8 728,469 - GEMAOFIL_00627 0.41 +0.8 728,627 + GEMAOFIL_00627 0.57 +0.8 728,628 - GEMAOFIL_00627 0.57 -0.4 728,628 - GEMAOFIL_00627 0.57 +0.4 728,628 - GEMAOFIL_00627 0.57 +0.9 728,861 + GEMAOFIL_00627 0.81 +0.4 728,889 + GEMAOFIL_00627 0.84 +0.8 728,890 - GEMAOFIL_00627 0.84 -0.0 728,912 + GEMAOFIL_00627 0.86 +0.3 729,028 - -1.0
Or see this region's nucleotide sequence