Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_04633

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_04631 and GEMAOFIL_04632 are separated by 234 nucleotidesGEMAOFIL_04632 and GEMAOFIL_04633 are separated by 111 nucleotidesGEMAOFIL_04633 and GEMAOFIL_04634 are separated by 164 nucleotides GEMAOFIL_04631: GEMAOFIL_04631 - hypothetical protein, at 5,108,212 to 5,109,783 _04631 GEMAOFIL_04632: GEMAOFIL_04632 - tRNA-Lys, at 5,110,018 to 5,110,093 _04632 GEMAOFIL_04633: GEMAOFIL_04633 - 7-carboxy-7-deazaguanine synthase, at 5,110,205 to 5,110,852 _04633 GEMAOFIL_04634: GEMAOFIL_04634 - Cell division coordinator CpoB, at 5,111,017 to 5,111,850 _04634 Position (kb) 5110 5111Strain fitness (log2 ratio) -1 0 1 2at 5109.342 kb on + strand, within GEMAOFIL_04631at 5109.590 kb on - strand, within GEMAOFIL_04631at 5109.627 kb on - strandat 5109.816 kb on + strandat 5109.816 kb on + strandat 5109.855 kb on + strandat 5109.856 kb on - strandat 5109.856 kb on - strandat 5109.914 kb on - strandat 5110.110 kb on + strandat 5110.111 kb on - strandat 5110.144 kb on + strandat 5110.184 kb on - strandat 5110.233 kb on + strandat 5110.234 kb on - strandat 5110.234 kb on - strandat 5110.722 kb on + strand, within GEMAOFIL_04633at 5110.839 kb on - strandat 5110.868 kb on - strandat 5110.941 kb on + strandat 5111.018 kb on + strandat 5111.070 kb on - strandat 5111.077 kb on + strandat 5111.078 kb on - strandat 5111.113 kb on - strand, within GEMAOFIL_04634at 5111.132 kb on - strand, within GEMAOFIL_04634at 5111.132 kb on - strand, within GEMAOFIL_04634at 5111.369 kb on + strand, within GEMAOFIL_04634at 5111.370 kb on - strand, within GEMAOFIL_04634at 5111.491 kb on - strand, within GEMAOFIL_04634at 5111.524 kb on + strand, within GEMAOFIL_04634at 5111.524 kb on + strand, within GEMAOFIL_04634at 5111.525 kb on - strand, within GEMAOFIL_04634at 5111.526 kb on + strand, within GEMAOFIL_04634at 5111.526 kb on + strand, within GEMAOFIL_04634at 5111.683 kb on - strand, within GEMAOFIL_04634at 5111.699 kb on + strand, within GEMAOFIL_04634at 5111.700 kb on - strand, within GEMAOFIL_04634at 5111.732 kb on + strand, within GEMAOFIL_04634at 5111.752 kb on - strand, within GEMAOFIL_04634at 5111.752 kb on - strand, within GEMAOFIL_04634at 5111.754 kb on - strand, within GEMAOFIL_04634at 5111.754 kb on - strand, within GEMAOFIL_04634at 5111.767 kb on - strandat 5111.821 kb on + strandat 5111.827 kb on + strandat 5111.827 kb on + strandat 5111.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,109,342 + GEMAOFIL_04631 0.72 -0.1
5,109,590 - GEMAOFIL_04631 0.88 -0.2
5,109,627 - +1.1
5,109,816 + +0.7
5,109,816 + +0.3
5,109,855 + -0.2
5,109,856 - -0.2
5,109,856 - -0.1
5,109,914 - +0.3
5,110,110 + +0.5
5,110,111 - +0.9
5,110,144 + +1.4
5,110,184 - -0.7
5,110,233 + -0.6
5,110,234 - -0.2
5,110,234 - +0.3
5,110,722 + GEMAOFIL_04633 0.80 -0.9
5,110,839 - +0.5
5,110,868 - +0.8
5,110,941 + -0.7
5,111,018 + -0.1
5,111,070 - +0.1
5,111,077 + -0.5
5,111,078 - +0.9
5,111,113 - GEMAOFIL_04634 0.12 +1.8
5,111,132 - GEMAOFIL_04634 0.14 -0.8
5,111,132 - GEMAOFIL_04634 0.14 -0.2
5,111,369 + GEMAOFIL_04634 0.42 +0.2
5,111,370 - GEMAOFIL_04634 0.42 -0.1
5,111,491 - GEMAOFIL_04634 0.57 +0.8
5,111,524 + GEMAOFIL_04634 0.61 -1.7
5,111,524 + GEMAOFIL_04634 0.61 -0.5
5,111,525 - GEMAOFIL_04634 0.61 -0.2
5,111,526 + GEMAOFIL_04634 0.61 -0.1
5,111,526 + GEMAOFIL_04634 0.61 -0.1
5,111,683 - GEMAOFIL_04634 0.80 -0.1
5,111,699 + GEMAOFIL_04634 0.82 -0.1
5,111,700 - GEMAOFIL_04634 0.82 -0.2
5,111,732 + GEMAOFIL_04634 0.86 +0.7
5,111,752 - GEMAOFIL_04634 0.88 -0.4
5,111,752 - GEMAOFIL_04634 0.88 +0.7
5,111,754 - GEMAOFIL_04634 0.88 -0.4
5,111,754 - GEMAOFIL_04634 0.88 -1.4
5,111,767 - -0.4
5,111,821 + +0.3
5,111,827 + -0.3
5,111,827 + -0.2
5,111,828 - -1.4

Or see this region's nucleotide sequence