Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_01305

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_01303 and GEMAOFIL_01304 are separated by 370 nucleotidesGEMAOFIL_01304 and GEMAOFIL_01305 are separated by 71 nucleotidesGEMAOFIL_01305 and GEMAOFIL_01306 overlap by 4 nucleotides GEMAOFIL_01303: GEMAOFIL_01303 - Glycerol uptake facilitator protein, at 1,480,052 to 1,480,864 _01303 GEMAOFIL_01304: GEMAOFIL_01304 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 1,481,235 to 1,481,705 _01304 GEMAOFIL_01305: GEMAOFIL_01305 - Vitamin B12 import ATP-binding protein BtuD, at 1,481,777 to 1,482,886 _01305 GEMAOFIL_01306: GEMAOFIL_01306 - Ornithine carbamoyltransferase 1, anabolic, at 1,482,883 to 1,483,806 _01306 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1481.002 kb on + strandat 1481.022 kb on + strandat 1481.023 kb on - strandat 1481.023 kb on - strandat 1481.024 kb on + strandat 1481.024 kb on + strandat 1481.025 kb on - strandat 1481.031 kb on - strandat 1481.031 kb on - strandat 1481.053 kb on + strandat 1481.159 kb on + strandat 1481.182 kb on + strandat 1481.183 kb on - strandat 1481.320 kb on - strand, within GEMAOFIL_01304at 1481.669 kb on + strandat 1481.764 kb on - strandat 1481.802 kb on - strandat 1482.034 kb on - strand, within GEMAOFIL_01305at 1482.090 kb on + strand, within GEMAOFIL_01305at 1482.193 kb on - strand, within GEMAOFIL_01305at 1482.193 kb on - strand, within GEMAOFIL_01305at 1482.193 kb on - strand, within GEMAOFIL_01305at 1482.222 kb on + strand, within GEMAOFIL_01305at 1482.222 kb on + strand, within GEMAOFIL_01305at 1482.616 kb on - strand, within GEMAOFIL_01305at 1482.616 kb on - strand, within GEMAOFIL_01305at 1482.662 kb on - strand, within GEMAOFIL_01305at 1482.873 kb on - strandat 1483.060 kb on - strand, within GEMAOFIL_01306at 1483.248 kb on - strand, within GEMAOFIL_01306at 1483.300 kb on + strand, within GEMAOFIL_01306at 1483.300 kb on + strand, within GEMAOFIL_01306at 1483.300 kb on + strand, within GEMAOFIL_01306at 1483.301 kb on - strand, within GEMAOFIL_01306at 1483.301 kb on - strand, within GEMAOFIL_01306at 1483.301 kb on - strand, within GEMAOFIL_01306at 1483.301 kb on - strand, within GEMAOFIL_01306at 1483.301 kb on - strand, within GEMAOFIL_01306at 1483.304 kb on + strand, within GEMAOFIL_01306at 1483.305 kb on - strand, within GEMAOFIL_01306at 1483.305 kb on - strand, within GEMAOFIL_01306at 1483.305 kb on - strand, within GEMAOFIL_01306at 1483.305 kb on - strand, within GEMAOFIL_01306at 1483.305 kb on - strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.317 kb on + strand, within GEMAOFIL_01306at 1483.318 kb on - strand, within GEMAOFIL_01306at 1483.318 kb on - strand, within GEMAOFIL_01306at 1483.807 kb on + strandat 1483.807 kb on + strandat 1483.807 kb on + strandat 1483.808 kb on - strandat 1483.808 kb on - strandat 1483.808 kb on - strandat 1483.812 kb on - strandat 1483.812 kb on - strandat 1483.834 kb on + strandat 1483.851 kb on - strandat 1483.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,481,002 + -0.0
1,481,022 + -0.8
1,481,023 - -1.4
1,481,023 - +0.8
1,481,024 + +0.3
1,481,024 + -0.2
1,481,025 - +0.6
1,481,031 - +1.3
1,481,031 - -0.3
1,481,053 + +0.2
1,481,159 + +0.1
1,481,182 + +0.4
1,481,183 - +0.1
1,481,320 - GEMAOFIL_01304 0.18 +0.4
1,481,669 + -0.3
1,481,764 - +0.6
1,481,802 - +0.8
1,482,034 - GEMAOFIL_01305 0.23 +0.9
1,482,090 + GEMAOFIL_01305 0.28 +0.2
1,482,193 - GEMAOFIL_01305 0.37 -0.4
1,482,193 - GEMAOFIL_01305 0.37 +0.7
1,482,193 - GEMAOFIL_01305 0.37 +0.3
1,482,222 + GEMAOFIL_01305 0.40 -0.1
1,482,222 + GEMAOFIL_01305 0.40 -0.2
1,482,616 - GEMAOFIL_01305 0.76 -0.1
1,482,616 - GEMAOFIL_01305 0.76 -0.8
1,482,662 - GEMAOFIL_01305 0.80 -0.4
1,482,873 - +0.2
1,483,060 - GEMAOFIL_01306 0.19 -3.1
1,483,248 - GEMAOFIL_01306 0.40 -2.6
1,483,300 + GEMAOFIL_01306 0.45 -3.2
1,483,300 + GEMAOFIL_01306 0.45 -2.9
1,483,300 + GEMAOFIL_01306 0.45 -3.4
1,483,301 - GEMAOFIL_01306 0.45 -2.6
1,483,301 - GEMAOFIL_01306 0.45 -4.2
1,483,301 - GEMAOFIL_01306 0.45 -3.8
1,483,301 - GEMAOFIL_01306 0.45 -2.6
1,483,301 - GEMAOFIL_01306 0.45 -3.4
1,483,304 + GEMAOFIL_01306 0.46 -5.5
1,483,305 - GEMAOFIL_01306 0.46 -4.8
1,483,305 - GEMAOFIL_01306 0.46 -2.2
1,483,305 - GEMAOFIL_01306 0.46 -5.0
1,483,305 - GEMAOFIL_01306 0.46 -3.4
1,483,305 - GEMAOFIL_01306 0.46 -3.4
1,483,317 + GEMAOFIL_01306 0.47 -2.1
1,483,317 + GEMAOFIL_01306 0.47 -2.4
1,483,317 + GEMAOFIL_01306 0.47 -2.9
1,483,317 + GEMAOFIL_01306 0.47 -1.9
1,483,317 + GEMAOFIL_01306 0.47 -2.6
1,483,317 + GEMAOFIL_01306 0.47 -2.9
1,483,318 - GEMAOFIL_01306 0.47 -4.6
1,483,318 - GEMAOFIL_01306 0.47 -2.7
1,483,807 + -4.4
1,483,807 + -3.1
1,483,807 + -3.6
1,483,808 - -1.1
1,483,808 - -1.1
1,483,808 - -2.1
1,483,812 - -0.6
1,483,812 - -0.5
1,483,834 + -1.5
1,483,851 - +0.1
1,483,851 - -2.4

Or see this region's nucleotide sequence