Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04489 and GEMAOFIL_04490 overlap by 4 nucleotides GEMAOFIL_04490 and GEMAOFIL_04491 are separated by 92 nucleotides GEMAOFIL_04491 and GEMAOFIL_04492 are separated by 609 nucleotides
GEMAOFIL_04489: GEMAOFIL_04489 - Octopine transport system permease protein OccM, at 4,964,085 to 4,964,783
_04489
GEMAOFIL_04490: GEMAOFIL_04490 - Histidine transport system permease protein HisQ, at 4,964,780 to 4,965,469
_04490
GEMAOFIL_04491: GEMAOFIL_04491 - Lysine/arginine/ornithine-binding periplasmic protein, at 4,965,562 to 4,966,347
_04491
GEMAOFIL_04492: GEMAOFIL_04492 - Acetyl-coenzyme A synthetase, at 4,966,957 to 4,968,912
_04492
Position (kb) 4965
4966
4967 Strain fitness (log2 ratio) -1
0
1
2 at 4964.605 kb on + strand, within GEMAOFIL_04489 at 4964.611 kb on + strand, within GEMAOFIL_04489 at 4964.611 kb on + strand, within GEMAOFIL_04489 at 4964.611 kb on + strand, within GEMAOFIL_04489 at 4964.612 kb on - strand, within GEMAOFIL_04489 at 4964.740 kb on + strand at 4964.783 kb on + strand at 4964.783 kb on + strand at 4964.783 kb on + strand at 4964.784 kb on - strand at 4964.784 kb on - strand at 4964.812 kb on - strand at 4964.847 kb on - strand at 4964.866 kb on - strand, within GEMAOFIL_04490 at 4964.866 kb on - strand, within GEMAOFIL_04490 at 4964.894 kb on - strand, within GEMAOFIL_04490 at 4965.205 kb on + strand, within GEMAOFIL_04490 at 4965.205 kb on + strand, within GEMAOFIL_04490 at 4965.207 kb on + strand, within GEMAOFIL_04490 at 4965.208 kb on - strand, within GEMAOFIL_04490 at 4965.208 kb on - strand, within GEMAOFIL_04490 at 4965.316 kb on - strand, within GEMAOFIL_04490 at 4965.316 kb on - strand, within GEMAOFIL_04490 at 4965.316 kb on - strand, within GEMAOFIL_04490 at 4965.563 kb on + strand at 4965.599 kb on + strand at 4965.600 kb on - strand at 4965.719 kb on + strand, within GEMAOFIL_04491 at 4965.720 kb on - strand, within GEMAOFIL_04491 at 4965.720 kb on - strand, within GEMAOFIL_04491 at 4965.756 kb on - strand, within GEMAOFIL_04491 at 4965.870 kb on - strand, within GEMAOFIL_04491 at 4965.891 kb on + strand, within GEMAOFIL_04491 at 4966.025 kb on + strand, within GEMAOFIL_04491 at 4966.025 kb on + strand, within GEMAOFIL_04491 at 4966.028 kb on + strand, within GEMAOFIL_04491 at 4966.105 kb on + strand, within GEMAOFIL_04491 at 4966.105 kb on + strand, within GEMAOFIL_04491 at 4966.382 kb on + strand at 4966.382 kb on + strand at 4966.383 kb on - strand at 4966.578 kb on - strand at 4966.628 kb on - strand at 4966.667 kb on + strand at 4966.673 kb on + strand at 4966.748 kb on + strand at 4966.786 kb on + strand at 4966.787 kb on - strand at 4966.787 kb on - strand at 4966.787 kb on - strand at 4966.805 kb on + strand at 4966.805 kb on + strand at 4966.872 kb on + strand at 4966.949 kb on - strand at 4966.949 kb on - strand at 4966.949 kb on - strand at 4966.959 kb on - strand at 4967.228 kb on + strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.229 kb on - strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.234 kb on + strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.235 kb on - strand, within GEMAOFIL_04492 at 4967.263 kb on + strand, within GEMAOFIL_04492
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,964,605 + GEMAOFIL_04489 0.74 +0.4 4,964,611 + GEMAOFIL_04489 0.75 +0.2 4,964,611 + GEMAOFIL_04489 0.75 +0.1 4,964,611 + GEMAOFIL_04489 0.75 +0.2 4,964,612 - GEMAOFIL_04489 0.75 -0.3 4,964,740 + +2.4 4,964,783 + +0.1 4,964,783 + +0.9 4,964,783 + +0.4 4,964,784 - +0.3 4,964,784 - -0.4 4,964,812 - +0.1 4,964,847 - -1.2 4,964,866 - GEMAOFIL_04490 0.12 +0.9 4,964,866 - GEMAOFIL_04490 0.12 +1.2 4,964,894 - GEMAOFIL_04490 0.17 -0.2 4,965,205 + GEMAOFIL_04490 0.62 -0.4 4,965,205 + GEMAOFIL_04490 0.62 +0.9 4,965,207 + GEMAOFIL_04490 0.62 -0.9 4,965,208 - GEMAOFIL_04490 0.62 +0.1 4,965,208 - GEMAOFIL_04490 0.62 +0.6 4,965,316 - GEMAOFIL_04490 0.78 -1.0 4,965,316 - GEMAOFIL_04490 0.78 +0.3 4,965,316 - GEMAOFIL_04490 0.78 +0.3 4,965,563 + -0.1 4,965,599 + +0.0 4,965,600 - -0.1 4,965,719 + GEMAOFIL_04491 0.20 +0.1 4,965,720 - GEMAOFIL_04491 0.20 +0.4 4,965,720 - GEMAOFIL_04491 0.20 +0.5 4,965,756 - GEMAOFIL_04491 0.25 +0.4 4,965,870 - GEMAOFIL_04491 0.39 -0.1 4,965,891 + GEMAOFIL_04491 0.42 +0.3 4,966,025 + GEMAOFIL_04491 0.59 +0.9 4,966,025 + GEMAOFIL_04491 0.59 +0.2 4,966,028 + GEMAOFIL_04491 0.59 +0.4 4,966,105 + GEMAOFIL_04491 0.69 +0.5 4,966,105 + GEMAOFIL_04491 0.69 +0.5 4,966,382 + -0.6 4,966,382 + -1.6 4,966,383 - +0.0 4,966,578 - +0.4 4,966,628 - +0.6 4,966,667 + +0.8 4,966,673 + +0.2 4,966,748 + +1.1 4,966,786 + -0.3 4,966,787 - +0.8 4,966,787 - +1.8 4,966,787 - +0.3 4,966,805 + +0.1 4,966,805 + +1.3 4,966,872 + +0.1 4,966,949 - +0.2 4,966,949 - +0.7 4,966,949 - -0.5 4,966,959 - -0.1 4,967,228 + GEMAOFIL_04492 0.14 +1.1 4,967,229 - GEMAOFIL_04492 0.14 +1.4 4,967,229 - GEMAOFIL_04492 0.14 +1.1 4,967,229 - GEMAOFIL_04492 0.14 +0.8 4,967,229 - GEMAOFIL_04492 0.14 +0.4 4,967,229 - GEMAOFIL_04492 0.14 +1.6 4,967,229 - GEMAOFIL_04492 0.14 +2.1 4,967,234 + GEMAOFIL_04492 0.14 +1.6 4,967,234 + GEMAOFIL_04492 0.14 +0.1 4,967,234 + GEMAOFIL_04492 0.14 +0.9 4,967,234 + GEMAOFIL_04492 0.14 +0.5 4,967,234 + GEMAOFIL_04492 0.14 +0.4 4,967,234 + GEMAOFIL_04492 0.14 +0.3 4,967,234 + GEMAOFIL_04492 0.14 +0.2 4,967,234 + GEMAOFIL_04492 0.14 +1.3 4,967,234 + GEMAOFIL_04492 0.14 +0.8 4,967,234 + GEMAOFIL_04492 0.14 +1.0 4,967,234 + GEMAOFIL_04492 0.14 +0.5 4,967,235 - GEMAOFIL_04492 0.14 +1.0 4,967,235 - GEMAOFIL_04492 0.14 +0.3 4,967,235 - GEMAOFIL_04492 0.14 +1.7 4,967,235 - GEMAOFIL_04492 0.14 +2.2 4,967,235 - GEMAOFIL_04492 0.14 +1.5 4,967,235 - GEMAOFIL_04492 0.14 +0.6 4,967,235 - GEMAOFIL_04492 0.14 +0.2 4,967,235 - GEMAOFIL_04492 0.14 +1.1 4,967,235 - GEMAOFIL_04492 0.14 +2.2 4,967,235 - GEMAOFIL_04492 0.14 +0.3 4,967,235 - GEMAOFIL_04492 0.14 +0.5 4,967,263 + GEMAOFIL_04492 0.16 +1.5
Or see this region's nucleotide sequence