Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_03260

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_03258 and GEMAOFIL_03259 are separated by 2 nucleotidesGEMAOFIL_03259 and GEMAOFIL_03260 are separated by 22 nucleotidesGEMAOFIL_03260 and GEMAOFIL_03261 are separated by 36 nucleotides GEMAOFIL_03258: GEMAOFIL_03258 - Sulfate/thiosulfate import ATP-binding protein CysA, at 3,604,075 to 3,604,851 _03258 GEMAOFIL_03259: GEMAOFIL_03259 - High-affinity branched-chain amino acid transport system permease protein LivH, at 3,604,854 to 3,605,735 _03259 GEMAOFIL_03260: GEMAOFIL_03260 - hypothetical protein, at 3,605,758 to 3,606,825 _03260 GEMAOFIL_03261: GEMAOFIL_03261 - hypothetical protein, at 3,606,862 to 3,608,193 _03261 Position (kb) 3605 3606 3607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3604.772 kb on - strand, within GEMAOFIL_03258at 3604.837 kb on + strandat 3604.906 kb on - strandat 3605.662 kb on - strandat 3605.662 kb on - strandat 3605.689 kb on + strandat 3605.794 kb on + strandat 3605.844 kb on - strandat 3605.896 kb on + strand, within GEMAOFIL_03260at 3606.031 kb on + strand, within GEMAOFIL_03260at 3606.032 kb on - strand, within GEMAOFIL_03260at 3606.152 kb on - strand, within GEMAOFIL_03260at 3606.302 kb on - strand, within GEMAOFIL_03260at 3606.302 kb on - strand, within GEMAOFIL_03260at 3606.472 kb on + strand, within GEMAOFIL_03260at 3606.509 kb on - strand, within GEMAOFIL_03260at 3606.832 kb on - strandat 3606.875 kb on + strandat 3607.039 kb on + strand, within GEMAOFIL_03261at 3607.040 kb on - strand, within GEMAOFIL_03261at 3607.102 kb on + strand, within GEMAOFIL_03261at 3607.103 kb on - strand, within GEMAOFIL_03261at 3607.103 kb on - strand, within GEMAOFIL_03261at 3607.130 kb on - strand, within GEMAOFIL_03261at 3607.625 kb on - strand, within GEMAOFIL_03261at 3607.650 kb on + strand, within GEMAOFIL_03261at 3607.651 kb on - strand, within GEMAOFIL_03261at 3607.825 kb on + strand, within GEMAOFIL_03261

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,604,772 - GEMAOFIL_03258 0.90 +1.4
3,604,837 + -1.2
3,604,906 - -0.3
3,605,662 - +0.2
3,605,662 - +0.1
3,605,689 + -0.2
3,605,794 + +0.4
3,605,844 - +0.8
3,605,896 + GEMAOFIL_03260 0.13 +0.9
3,606,031 + GEMAOFIL_03260 0.26 -0.7
3,606,032 - GEMAOFIL_03260 0.26 +0.3
3,606,152 - GEMAOFIL_03260 0.37 -0.5
3,606,302 - GEMAOFIL_03260 0.51 +0.7
3,606,302 - GEMAOFIL_03260 0.51 +0.8
3,606,472 + GEMAOFIL_03260 0.67 -0.2
3,606,509 - GEMAOFIL_03260 0.70 +0.1
3,606,832 - -1.9
3,606,875 + +1.8
3,607,039 + GEMAOFIL_03261 0.13 -0.9
3,607,040 - GEMAOFIL_03261 0.13 -0.3
3,607,102 + GEMAOFIL_03261 0.18 -2.9
3,607,103 - GEMAOFIL_03261 0.18 +1.0
3,607,103 - GEMAOFIL_03261 0.18 -0.0
3,607,130 - GEMAOFIL_03261 0.20 +0.5
3,607,625 - GEMAOFIL_03261 0.57 +0.2
3,607,650 + GEMAOFIL_03261 0.59 -0.1
3,607,651 - GEMAOFIL_03261 0.59 +0.9
3,607,825 + GEMAOFIL_03261 0.72 +0.0

Or see this region's nucleotide sequence