Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00331

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00330 and GEMAOFIL_00331 are separated by 324 nucleotidesGEMAOFIL_00331 and GEMAOFIL_00332 are separated by 266 nucleotides GEMAOFIL_00330: GEMAOFIL_00330 - hypothetical protein, at 372,115 to 372,873 _00330 GEMAOFIL_00331: GEMAOFIL_00331 - hypothetical protein, at 373,198 to 373,908 _00331 GEMAOFIL_00332: GEMAOFIL_00332 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 374,175 to 375,068 _00332 Position (kb) 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 372.212 kb on + strand, within GEMAOFIL_00330at 372.212 kb on + strand, within GEMAOFIL_00330at 372.213 kb on - strand, within GEMAOFIL_00330at 372.213 kb on - strand, within GEMAOFIL_00330at 372.298 kb on + strand, within GEMAOFIL_00330at 372.299 kb on - strand, within GEMAOFIL_00330at 372.299 kb on - strand, within GEMAOFIL_00330at 372.302 kb on + strand, within GEMAOFIL_00330at 372.302 kb on + strand, within GEMAOFIL_00330at 372.303 kb on - strand, within GEMAOFIL_00330at 372.303 kb on - strand, within GEMAOFIL_00330at 372.447 kb on + strand, within GEMAOFIL_00330at 372.447 kb on + strand, within GEMAOFIL_00330at 372.447 kb on + strand, within GEMAOFIL_00330at 372.489 kb on + strand, within GEMAOFIL_00330at 372.490 kb on - strand, within GEMAOFIL_00330at 372.490 kb on - strand, within GEMAOFIL_00330at 372.587 kb on + strand, within GEMAOFIL_00330at 372.860 kb on - strandat 372.886 kb on + strandat 372.886 kb on + strandat 372.922 kb on + strandat 373.017 kb on - strandat 373.061 kb on + strandat 373.108 kb on + strandat 373.152 kb on - strandat 373.383 kb on + strand, within GEMAOFIL_00331at 373.426 kb on + strand, within GEMAOFIL_00331at 373.427 kb on - strand, within GEMAOFIL_00331at 373.431 kb on + strand, within GEMAOFIL_00331at 373.431 kb on + strand, within GEMAOFIL_00331at 373.622 kb on + strand, within GEMAOFIL_00331at 373.622 kb on + strand, within GEMAOFIL_00331at 373.622 kb on + strand, within GEMAOFIL_00331at 373.622 kb on + strand, within GEMAOFIL_00331at 373.622 kb on + strand, within GEMAOFIL_00331at 373.672 kb on - strand, within GEMAOFIL_00331at 373.964 kb on + strandat 373.965 kb on - strandat 373.965 kb on - strandat 373.977 kb on + strandat 373.977 kb on + strandat 374.009 kb on + strandat 374.009 kb on + strandat 374.009 kb on + strandat 374.010 kb on - strandat 374.010 kb on - strandat 374.190 kb on - strandat 374.190 kb on - strandat 374.363 kb on + strand, within GEMAOFIL_00332at 374.363 kb on + strand, within GEMAOFIL_00332at 374.364 kb on - strand, within GEMAOFIL_00332at 374.364 kb on - strand, within GEMAOFIL_00332at 374.427 kb on - strand, within GEMAOFIL_00332at 374.517 kb on - strand, within GEMAOFIL_00332at 374.541 kb on + strand, within GEMAOFIL_00332at 374.541 kb on + strand, within GEMAOFIL_00332at 374.541 kb on + strand, within GEMAOFIL_00332at 374.543 kb on + strand, within GEMAOFIL_00332at 374.607 kb on - strand, within GEMAOFIL_00332at 374.607 kb on - strand, within GEMAOFIL_00332at 374.694 kb on + strand, within GEMAOFIL_00332at 374.694 kb on + strand, within GEMAOFIL_00332at 374.695 kb on - strand, within GEMAOFIL_00332at 374.696 kb on + strand, within GEMAOFIL_00332at 374.707 kb on - strand, within GEMAOFIL_00332at 374.708 kb on + strand, within GEMAOFIL_00332at 374.709 kb on - strand, within GEMAOFIL_00332at 374.827 kb on + strand, within GEMAOFIL_00332at 374.828 kb on - strand, within GEMAOFIL_00332at 374.828 kb on - strand, within GEMAOFIL_00332

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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372,212 + GEMAOFIL_00330 0.13 +0.0
372,212 + GEMAOFIL_00330 0.13 +1.0
372,213 - GEMAOFIL_00330 0.13 -0.5
372,213 - GEMAOFIL_00330 0.13 +0.7
372,298 + GEMAOFIL_00330 0.24 +0.8
372,299 - GEMAOFIL_00330 0.24 -0.3
372,299 - GEMAOFIL_00330 0.24 -0.8
372,302 + GEMAOFIL_00330 0.25 -0.7
372,302 + GEMAOFIL_00330 0.25 -0.3
372,303 - GEMAOFIL_00330 0.25 +0.5
372,303 - GEMAOFIL_00330 0.25 +0.3
372,447 + GEMAOFIL_00330 0.44 +0.9
372,447 + GEMAOFIL_00330 0.44 +0.9
372,447 + GEMAOFIL_00330 0.44 +1.1
372,489 + GEMAOFIL_00330 0.49 +0.4
372,490 - GEMAOFIL_00330 0.49 -0.5
372,490 - GEMAOFIL_00330 0.49 -0.0
372,587 + GEMAOFIL_00330 0.62 +0.2
372,860 - -0.9
372,886 + +0.1
372,886 + -0.0
372,922 + -0.8
373,017 - +1.1
373,061 + +0.4
373,108 + -0.6
373,152 - -0.7
373,383 + GEMAOFIL_00331 0.26 +0.2
373,426 + GEMAOFIL_00331 0.32 +2.4
373,427 - GEMAOFIL_00331 0.32 -2.9
373,431 + GEMAOFIL_00331 0.33 -0.0
373,431 + GEMAOFIL_00331 0.33 -0.4
373,622 + GEMAOFIL_00331 0.60 +0.1
373,622 + GEMAOFIL_00331 0.60 -0.5
373,622 + GEMAOFIL_00331 0.60 -0.2
373,622 + GEMAOFIL_00331 0.60 -0.6
373,622 + GEMAOFIL_00331 0.60 -0.2
373,672 - GEMAOFIL_00331 0.67 +0.6
373,964 + +0.1
373,965 - -0.1
373,965 - +0.2
373,977 + -0.2
373,977 + +0.7
374,009 + +0.3
374,009 + -0.1
374,009 + +0.4
374,010 - +0.2
374,010 - +0.4
374,190 - -0.8
374,190 - -0.3
374,363 + GEMAOFIL_00332 0.21 -0.2
374,363 + GEMAOFIL_00332 0.21 -1.4
374,364 - GEMAOFIL_00332 0.21 +0.2
374,364 - GEMAOFIL_00332 0.21 +1.1
374,427 - GEMAOFIL_00332 0.28 +0.2
374,517 - GEMAOFIL_00332 0.38 +0.7
374,541 + GEMAOFIL_00332 0.41 +0.6
374,541 + GEMAOFIL_00332 0.41 +0.9
374,541 + GEMAOFIL_00332 0.41 +0.2
374,543 + GEMAOFIL_00332 0.41 -1.2
374,607 - GEMAOFIL_00332 0.48 +0.5
374,607 - GEMAOFIL_00332 0.48 +0.5
374,694 + GEMAOFIL_00332 0.58 +0.1
374,694 + GEMAOFIL_00332 0.58 -1.5
374,695 - GEMAOFIL_00332 0.58 +0.4
374,696 + GEMAOFIL_00332 0.58 -1.4
374,707 - GEMAOFIL_00332 0.60 -0.0
374,708 + GEMAOFIL_00332 0.60 +0.4
374,709 - GEMAOFIL_00332 0.60 -0.1
374,827 + GEMAOFIL_00332 0.73 +0.7
374,828 - GEMAOFIL_00332 0.73 -0.0
374,828 - GEMAOFIL_00332 0.73 +1.1

Or see this region's nucleotide sequence