Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_03698 and GEMAOFIL_03699 are separated by 15 nucleotides GEMAOFIL_03699 and GEMAOFIL_03700 overlap by 4 nucleotides GEMAOFIL_03700 and GEMAOFIL_03701 are separated by 174 nucleotides
GEMAOFIL_03698: GEMAOFIL_03698 - Multidrug export protein EmrA, at 4,121,588 to 4,122,787
_03698
GEMAOFIL_03699: GEMAOFIL_03699 - Toluene efflux pump outer membrane protein TtgF, at 4,122,803 to 4,124,254
_03699
GEMAOFIL_03700: GEMAOFIL_03700 - Multiple antibiotic resistance protein MarR, at 4,124,251 to 4,124,724
_03700
GEMAOFIL_03701: GEMAOFIL_03701 - Translocation and assembly module subunit TamB, at 4,124,899 to 4,128,570
_03701
Position (kb) 4122
4123
4124
4125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4121.829 kb on - strand, within GEMAOFIL_03698 at 4121.949 kb on + strand, within GEMAOFIL_03698 at 4121.949 kb on + strand, within GEMAOFIL_03698 at 4121.950 kb on - strand, within GEMAOFIL_03698 at 4122.111 kb on + strand, within GEMAOFIL_03698 at 4122.112 kb on - strand, within GEMAOFIL_03698 at 4122.357 kb on + strand, within GEMAOFIL_03698 at 4122.357 kb on + strand, within GEMAOFIL_03698 at 4122.357 kb on + strand, within GEMAOFIL_03698 at 4122.358 kb on - strand, within GEMAOFIL_03698 at 4122.358 kb on - strand, within GEMAOFIL_03698 at 4122.424 kb on + strand, within GEMAOFIL_03698 at 4122.429 kb on + strand, within GEMAOFIL_03698 at 4122.429 kb on + strand, within GEMAOFIL_03698 at 4122.614 kb on + strand, within GEMAOFIL_03698 at 4122.615 kb on - strand, within GEMAOFIL_03698 at 4122.615 kb on - strand, within GEMAOFIL_03698 at 4122.615 kb on - strand, within GEMAOFIL_03698 at 4122.618 kb on + strand, within GEMAOFIL_03698 at 4122.618 kb on + strand, within GEMAOFIL_03698 at 4122.618 kb on + strand, within GEMAOFIL_03698 at 4122.660 kb on + strand, within GEMAOFIL_03698 at 4122.794 kb on + strand at 4122.795 kb on - strand at 4122.795 kb on - strand at 4122.805 kb on - strand at 4122.969 kb on + strand, within GEMAOFIL_03699 at 4122.974 kb on - strand, within GEMAOFIL_03699 at 4123.129 kb on - strand, within GEMAOFIL_03699 at 4123.225 kb on + strand, within GEMAOFIL_03699 at 4123.226 kb on - strand, within GEMAOFIL_03699 at 4123.240 kb on + strand, within GEMAOFIL_03699 at 4123.593 kb on + strand, within GEMAOFIL_03699 at 4123.593 kb on + strand, within GEMAOFIL_03699 at 4123.834 kb on - strand, within GEMAOFIL_03699 at 4124.193 kb on + strand at 4124.194 kb on - strand at 4124.249 kb on - strand at 4124.249 kb on - strand at 4124.256 kb on + strand at 4124.257 kb on + strand at 4124.257 kb on - strand at 4124.257 kb on - strand at 4124.259 kb on + strand at 4124.259 kb on + strand at 4124.628 kb on + strand, within GEMAOFIL_03700 at 4124.629 kb on - strand, within GEMAOFIL_03700 at 4124.694 kb on + strand at 4124.737 kb on + strand at 4124.738 kb on - strand at 4124.807 kb on + strand at 4124.808 kb on - strand at 4124.820 kb on - strand at 4124.820 kb on - strand at 4124.845 kb on + strand at 4124.922 kb on + strand at 4124.923 kb on - strand at 4124.960 kb on + strand at 4124.961 kb on - strand at 4124.982 kb on - strand at 4125.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 4,121,829 - GEMAOFIL_03698 0.20 +0.1 4,121,949 + GEMAOFIL_03698 0.30 -1.1 4,121,949 + GEMAOFIL_03698 0.30 +0.8 4,121,950 - GEMAOFIL_03698 0.30 -0.4 4,122,111 + GEMAOFIL_03698 0.44 -2.9 4,122,112 - GEMAOFIL_03698 0.44 +0.9 4,122,357 + GEMAOFIL_03698 0.64 +0.9 4,122,357 + GEMAOFIL_03698 0.64 -0.7 4,122,357 + GEMAOFIL_03698 0.64 +0.1 4,122,358 - GEMAOFIL_03698 0.64 -0.1 4,122,358 - GEMAOFIL_03698 0.64 +0.5 4,122,424 + GEMAOFIL_03698 0.70 -0.5 4,122,429 + GEMAOFIL_03698 0.70 -0.1 4,122,429 + GEMAOFIL_03698 0.70 +0.2 4,122,614 + GEMAOFIL_03698 0.85 -1.5 4,122,615 - GEMAOFIL_03698 0.86 +0.5 4,122,615 - GEMAOFIL_03698 0.86 +0.4 4,122,615 - GEMAOFIL_03698 0.86 -0.4 4,122,618 + GEMAOFIL_03698 0.86 -0.3 4,122,618 + GEMAOFIL_03698 0.86 +0.1 4,122,618 + GEMAOFIL_03698 0.86 +0.1 4,122,660 + GEMAOFIL_03698 0.89 -0.1 4,122,794 + +0.2 4,122,795 - +0.2 4,122,795 - +0.2 4,122,805 - -0.1 4,122,969 + GEMAOFIL_03699 0.11 -1.1 4,122,974 - GEMAOFIL_03699 0.12 -0.9 4,123,129 - GEMAOFIL_03699 0.22 +0.6 4,123,225 + GEMAOFIL_03699 0.29 +0.4 4,123,226 - GEMAOFIL_03699 0.29 -0.4 4,123,240 + GEMAOFIL_03699 0.30 -0.6 4,123,593 + GEMAOFIL_03699 0.54 -0.4 4,123,593 + GEMAOFIL_03699 0.54 +0.9 4,123,834 - GEMAOFIL_03699 0.71 +0.1 4,124,193 + +0.2 4,124,194 - -0.6 4,124,249 - +0.3 4,124,249 - -2.1 4,124,256 + +0.1 4,124,257 + -0.7 4,124,257 - -0.2 4,124,257 - -0.0 4,124,259 + +0.0 4,124,259 + -0.3 4,124,628 + GEMAOFIL_03700 0.80 +0.0 4,124,629 - GEMAOFIL_03700 0.80 +0.2 4,124,694 + +0.0 4,124,737 + +0.0 4,124,738 - -0.7 4,124,807 + -0.1 4,124,808 - +0.3 4,124,820 - -0.3 4,124,820 - -0.5 4,124,845 + +0.3 4,124,922 + +0.1 4,124,923 - +0.5 4,124,960 + -0.5 4,124,961 - +0.3 4,124,982 - +0.1 4,125,243 - +0.2
Or see this region's nucleotide sequence