Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00723

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00721 and GEMAOFIL_00722 are separated by 15 nucleotidesGEMAOFIL_00722 and GEMAOFIL_00723 are separated by 57 nucleotidesGEMAOFIL_00723 and GEMAOFIL_00724 are separated by 167 nucleotides GEMAOFIL_00721: GEMAOFIL_00721 - Phosphatidylserine decarboxylase proenzyme, at 843,855 to 844,715 _00721 GEMAOFIL_00722: GEMAOFIL_00722 - Thiosulfate sulfurtransferase, at 844,731 to 845,546 _00722 GEMAOFIL_00723: GEMAOFIL_00723 - hypothetical protein, at 845,604 to 847,139 _00723 GEMAOFIL_00724: GEMAOFIL_00724 - Motility protein A, at 847,307 to 848,158 _00724 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1at 844.715 kb on + strandat 844.726 kb on - strandat 844.726 kb on - strandat 844.829 kb on - strand, within GEMAOFIL_00722at 845.026 kb on + strand, within GEMAOFIL_00722at 845.090 kb on - strand, within GEMAOFIL_00722at 845.212 kb on + strand, within GEMAOFIL_00722at 845.213 kb on - strand, within GEMAOFIL_00722at 845.218 kb on + strand, within GEMAOFIL_00722at 845.252 kb on + strand, within GEMAOFIL_00722at 845.252 kb on + strand, within GEMAOFIL_00722at 845.287 kb on + strand, within GEMAOFIL_00722at 845.288 kb on - strand, within GEMAOFIL_00722at 845.297 kb on - strand, within GEMAOFIL_00722at 845.297 kb on - strand, within GEMAOFIL_00722at 845.297 kb on - strand, within GEMAOFIL_00722at 845.427 kb on - strand, within GEMAOFIL_00722at 845.841 kb on + strand, within GEMAOFIL_00723at 845.842 kb on - strand, within GEMAOFIL_00723at 846.026 kb on + strand, within GEMAOFIL_00723at 846.027 kb on - strand, within GEMAOFIL_00723at 846.113 kb on + strand, within GEMAOFIL_00723at 846.113 kb on + strand, within GEMAOFIL_00723at 846.114 kb on - strand, within GEMAOFIL_00723at 846.153 kb on + strand, within GEMAOFIL_00723at 846.153 kb on + strand, within GEMAOFIL_00723at 846.153 kb on + strand, within GEMAOFIL_00723at 846.154 kb on - strand, within GEMAOFIL_00723at 846.293 kb on - strand, within GEMAOFIL_00723at 846.500 kb on + strand, within GEMAOFIL_00723at 846.500 kb on + strand, within GEMAOFIL_00723at 846.500 kb on + strand, within GEMAOFIL_00723at 846.502 kb on + strand, within GEMAOFIL_00723at 846.786 kb on + strand, within GEMAOFIL_00723at 847.110 kb on + strandat 847.212 kb on + strandat 847.213 kb on - strandat 847.214 kb on + strandat 847.215 kb on - strandat 847.240 kb on + strandat 847.240 kb on + strandat 847.241 kb on - strandat 847.241 kb on - strandat 847.241 kb on - strandat 847.270 kb on - strandat 847.306 kb on + strandat 847.312 kb on + strandat 847.415 kb on - strand, within GEMAOFIL_00724at 847.460 kb on + strand, within GEMAOFIL_00724at 847.460 kb on + strand, within GEMAOFIL_00724at 847.676 kb on + strand, within GEMAOFIL_00724at 847.676 kb on + strand, within GEMAOFIL_00724at 847.676 kb on + strand, within GEMAOFIL_00724at 847.676 kb on + strand, within GEMAOFIL_00724at 847.676 kb on + strand, within GEMAOFIL_00724at 847.679 kb on - strand, within GEMAOFIL_00724at 847.943 kb on - strand, within GEMAOFIL_00724at 847.955 kb on + strand, within GEMAOFIL_00724at 847.956 kb on - strand, within GEMAOFIL_00724at 847.956 kb on - strand, within GEMAOFIL_00724at 848.018 kb on + strand, within GEMAOFIL_00724at 848.018 kb on + strand, within GEMAOFIL_00724at 848.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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844,715 + -2.2
844,726 - +0.0
844,726 - -0.5
844,829 - GEMAOFIL_00722 0.12 +0.4
845,026 + GEMAOFIL_00722 0.36 +0.7
845,090 - GEMAOFIL_00722 0.44 -0.1
845,212 + GEMAOFIL_00722 0.59 -3.2
845,213 - GEMAOFIL_00722 0.59 +1.5
845,218 + GEMAOFIL_00722 0.60 -2.5
845,252 + GEMAOFIL_00722 0.64 -2.7
845,252 + GEMAOFIL_00722 0.64 +0.5
845,287 + GEMAOFIL_00722 0.68 -2.2
845,288 - GEMAOFIL_00722 0.68 +0.0
845,297 - GEMAOFIL_00722 0.69 -0.1
845,297 - GEMAOFIL_00722 0.69 +0.1
845,297 - GEMAOFIL_00722 0.69 -0.9
845,427 - GEMAOFIL_00722 0.85 -0.5
845,841 + GEMAOFIL_00723 0.15 +0.8
845,842 - GEMAOFIL_00723 0.15 -0.3
846,026 + GEMAOFIL_00723 0.27 +1.1
846,027 - GEMAOFIL_00723 0.28 -1.1
846,113 + GEMAOFIL_00723 0.33 +0.2
846,113 + GEMAOFIL_00723 0.33 -0.9
846,114 - GEMAOFIL_00723 0.33 +0.6
846,153 + GEMAOFIL_00723 0.36 +0.4
846,153 + GEMAOFIL_00723 0.36 -0.5
846,153 + GEMAOFIL_00723 0.36 -0.8
846,154 - GEMAOFIL_00723 0.36 -0.0
846,293 - GEMAOFIL_00723 0.45 +0.1
846,500 + GEMAOFIL_00723 0.58 -0.2
846,500 + GEMAOFIL_00723 0.58 -1.7
846,500 + GEMAOFIL_00723 0.58 -1.5
846,502 + GEMAOFIL_00723 0.58 +0.5
846,786 + GEMAOFIL_00723 0.77 +0.4
847,110 + -0.1
847,212 + +0.2
847,213 - -0.6
847,214 + +0.7
847,215 - -0.3
847,240 + -0.7
847,240 + +0.6
847,241 - -1.7
847,241 - -0.1
847,241 - -1.0
847,270 - +0.2
847,306 + +0.1
847,312 + -0.7
847,415 - GEMAOFIL_00724 0.13 -1.4
847,460 + GEMAOFIL_00724 0.18 -0.8
847,460 + GEMAOFIL_00724 0.18 -0.4
847,676 + GEMAOFIL_00724 0.43 +0.3
847,676 + GEMAOFIL_00724 0.43 -0.5
847,676 + GEMAOFIL_00724 0.43 -0.8
847,676 + GEMAOFIL_00724 0.43 -0.9
847,676 + GEMAOFIL_00724 0.43 -0.9
847,679 - GEMAOFIL_00724 0.44 -0.8
847,943 - GEMAOFIL_00724 0.75 -0.4
847,955 + GEMAOFIL_00724 0.76 -0.4
847,956 - GEMAOFIL_00724 0.76 -0.5
847,956 - GEMAOFIL_00724 0.76 +0.4
848,018 + GEMAOFIL_00724 0.83 -0.0
848,018 + GEMAOFIL_00724 0.83 -0.4
848,103 - -1.1

Or see this region's nucleotide sequence