Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04900 and GEMAOFIL_04901 overlap by 4 nucleotides GEMAOFIL_04901 and GEMAOFIL_04902 overlap by 4 nucleotides
GEMAOFIL_04900: GEMAOFIL_04900 - RecBCD enzyme subunit RecD, at 5,391,488 to 5,393,557
_04900
GEMAOFIL_04901: GEMAOFIL_04901 - RecBCD enzyme subunit RecB, at 5,393,554 to 5,397,228
_04901
GEMAOFIL_04902: GEMAOFIL_04902 - RecBCD enzyme subunit RecC, at 5,397,225 to 5,400,674
_04902
Position (kb) 5393
5394
5395
5396
5397
5398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5393.424 kb on + strand at 5393.557 kb on + strand at 5393.705 kb on + strand at 5393.706 kb on - strand at 5393.792 kb on + strand at 5393.792 kb on + strand at 5393.898 kb on - strand at 5394.036 kb on + strand, within GEMAOFIL_04901 at 5394.200 kb on - strand, within GEMAOFIL_04901 at 5394.209 kb on + strand, within GEMAOFIL_04901 at 5394.308 kb on - strand, within GEMAOFIL_04901 at 5394.308 kb on - strand, within GEMAOFIL_04901 at 5394.308 kb on - strand, within GEMAOFIL_04901 at 5394.308 kb on - strand, within GEMAOFIL_04901 at 5394.308 kb on - strand, within GEMAOFIL_04901 at 5394.447 kb on - strand, within GEMAOFIL_04901 at 5394.926 kb on + strand, within GEMAOFIL_04901 at 5395.434 kb on - strand, within GEMAOFIL_04901 at 5395.526 kb on - strand, within GEMAOFIL_04901 at 5395.914 kb on - strand, within GEMAOFIL_04901 at 5395.919 kb on + strand, within GEMAOFIL_04901 at 5395.920 kb on - strand, within GEMAOFIL_04901 at 5395.943 kb on + strand, within GEMAOFIL_04901 at 5395.944 kb on - strand, within GEMAOFIL_04901 at 5396.921 kb on + strand at 5396.921 kb on + strand at 5397.070 kb on + strand at 5397.129 kb on - strand at 5397.335 kb on - strand at 5397.519 kb on + strand at 5397.520 kb on - strand at 5398.000 kb on - strand, within GEMAOFIL_04902 at 5398.225 kb on - strand, within GEMAOFIL_04902
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,393,424 + -4.2 5,393,557 + +0.7 5,393,705 + -0.2 5,393,706 - -2.4 5,393,792 + -1.5 5,393,792 + -0.7 5,393,898 - -0.5 5,394,036 + GEMAOFIL_04901 0.13 -2.5 5,394,200 - GEMAOFIL_04901 0.18 -1.9 5,394,209 + GEMAOFIL_04901 0.18 +0.1 5,394,308 - GEMAOFIL_04901 0.21 -0.2 5,394,308 - GEMAOFIL_04901 0.21 -0.6 5,394,308 - GEMAOFIL_04901 0.21 -1.5 5,394,308 - GEMAOFIL_04901 0.21 -1.6 5,394,308 - GEMAOFIL_04901 0.21 -1.9 5,394,447 - GEMAOFIL_04901 0.24 +0.9 5,394,926 + GEMAOFIL_04901 0.37 -1.9 5,395,434 - GEMAOFIL_04901 0.51 -2.5 5,395,526 - GEMAOFIL_04901 0.54 -2.5 5,395,914 - GEMAOFIL_04901 0.64 -2.5 5,395,919 + GEMAOFIL_04901 0.64 -2.5 5,395,920 - GEMAOFIL_04901 0.64 -1.2 5,395,943 + GEMAOFIL_04901 0.65 -3.1 5,395,944 - GEMAOFIL_04901 0.65 -2.9 5,396,921 + -1.2 5,396,921 + -2.7 5,397,070 + -1.8 5,397,129 - -1.1 5,397,335 - -1.5 5,397,519 + +0.9 5,397,520 - -0.5 5,398,000 - GEMAOFIL_04902 0.22 -1.1 5,398,225 - GEMAOFIL_04902 0.29 +0.4
Or see this region's nucleotide sequence