Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04760 and GEMAOFIL_04761 are separated by 69 nucleotides GEMAOFIL_04761 and GEMAOFIL_04762 are separated by 51 nucleotides
GEMAOFIL_04760: GEMAOFIL_04760 - hypothetical protein, at 5,247,491 to 5,250,025
_04760
GEMAOFIL_04761: GEMAOFIL_04761 - Maltoporin, at 5,250,095 to 5,251,315
_04761
GEMAOFIL_04762: GEMAOFIL_04762 - Trehalose-6-phosphate hydrolase, at 5,251,367 to 5,253,013
_04762
Position (kb) 5250
5251
5252 Strain fitness (log2 ratio) -2
-1
0
1 at 5249.201 kb on - strand, within GEMAOFIL_04760 at 5249.413 kb on + strand, within GEMAOFIL_04760 at 5249.413 kb on + strand, within GEMAOFIL_04760 at 5249.422 kb on - strand, within GEMAOFIL_04760 at 5249.603 kb on - strand, within GEMAOFIL_04760 at 5249.645 kb on + strand, within GEMAOFIL_04760 at 5249.646 kb on - strand, within GEMAOFIL_04760 at 5249.860 kb on + strand at 5249.860 kb on + strand at 5250.002 kb on + strand at 5250.108 kb on + strand at 5250.109 kb on - strand at 5250.231 kb on + strand, within GEMAOFIL_04761 at 5250.232 kb on - strand, within GEMAOFIL_04761 at 5250.237 kb on + strand, within GEMAOFIL_04761 at 5250.238 kb on - strand, within GEMAOFIL_04761 at 5250.238 kb on - strand, within GEMAOFIL_04761 at 5250.240 kb on + strand, within GEMAOFIL_04761 at 5250.393 kb on + strand, within GEMAOFIL_04761 at 5250.446 kb on + strand, within GEMAOFIL_04761 at 5250.446 kb on + strand, within GEMAOFIL_04761 at 5250.447 kb on - strand, within GEMAOFIL_04761 at 5250.525 kb on + strand, within GEMAOFIL_04761 at 5250.699 kb on + strand, within GEMAOFIL_04761 at 5250.819 kb on + strand, within GEMAOFIL_04761 at 5250.819 kb on + strand, within GEMAOFIL_04761 at 5250.819 kb on + strand, within GEMAOFIL_04761 at 5250.820 kb on - strand, within GEMAOFIL_04761 at 5250.820 kb on - strand, within GEMAOFIL_04761 at 5250.820 kb on - strand, within GEMAOFIL_04761 at 5250.840 kb on - strand, within GEMAOFIL_04761 at 5250.895 kb on + strand, within GEMAOFIL_04761 at 5250.896 kb on - strand, within GEMAOFIL_04761 at 5250.896 kb on - strand, within GEMAOFIL_04761 at 5250.907 kb on + strand, within GEMAOFIL_04761 at 5250.916 kb on - strand, within GEMAOFIL_04761 at 5250.916 kb on - strand, within GEMAOFIL_04761 at 5250.916 kb on - strand, within GEMAOFIL_04761 at 5250.916 kb on - strand, within GEMAOFIL_04761 at 5250.916 kb on - strand, within GEMAOFIL_04761 at 5250.978 kb on + strand, within GEMAOFIL_04761 at 5250.978 kb on + strand, within GEMAOFIL_04761 at 5250.978 kb on + strand, within GEMAOFIL_04761 at 5250.979 kb on - strand, within GEMAOFIL_04761 at 5250.979 kb on - strand, within GEMAOFIL_04761 at 5250.979 kb on - strand, within GEMAOFIL_04761 at 5251.129 kb on - strand, within GEMAOFIL_04761 at 5251.156 kb on - strand, within GEMAOFIL_04761 at 5251.156 kb on - strand, within GEMAOFIL_04761 at 5251.233 kb on + strand at 5251.354 kb on + strand at 5251.443 kb on + strand at 5251.447 kb on + strand at 5251.521 kb on + strand at 5251.662 kb on + strand, within GEMAOFIL_04762 at 5251.662 kb on + strand, within GEMAOFIL_04762 at 5251.877 kb on + strand, within GEMAOFIL_04762 at 5252.071 kb on + strand, within GEMAOFIL_04762
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,249,201 - GEMAOFIL_04760 0.67 +0.6 5,249,413 + GEMAOFIL_04760 0.76 -0.1 5,249,413 + GEMAOFIL_04760 0.76 +0.3 5,249,422 - GEMAOFIL_04760 0.76 -0.4 5,249,603 - GEMAOFIL_04760 0.83 +0.2 5,249,645 + GEMAOFIL_04760 0.85 -0.8 5,249,646 - GEMAOFIL_04760 0.85 +1.2 5,249,860 + -0.2 5,249,860 + -1.8 5,250,002 + -0.6 5,250,108 + +0.6 5,250,109 - -1.0 5,250,231 + GEMAOFIL_04761 0.11 -0.3 5,250,232 - GEMAOFIL_04761 0.11 -0.9 5,250,237 + GEMAOFIL_04761 0.12 +1.1 5,250,238 - GEMAOFIL_04761 0.12 -0.8 5,250,238 - GEMAOFIL_04761 0.12 +0.2 5,250,240 + GEMAOFIL_04761 0.12 +0.3 5,250,393 + GEMAOFIL_04761 0.24 +0.0 5,250,446 + GEMAOFIL_04761 0.29 -0.7 5,250,446 + GEMAOFIL_04761 0.29 +0.2 5,250,447 - GEMAOFIL_04761 0.29 -0.0 5,250,525 + GEMAOFIL_04761 0.35 -0.1 5,250,699 + GEMAOFIL_04761 0.49 +1.4 5,250,819 + GEMAOFIL_04761 0.59 -0.8 5,250,819 + GEMAOFIL_04761 0.59 +0.4 5,250,819 + GEMAOFIL_04761 0.59 +0.2 5,250,820 - GEMAOFIL_04761 0.59 +0.1 5,250,820 - GEMAOFIL_04761 0.59 -0.5 5,250,820 - GEMAOFIL_04761 0.59 -1.1 5,250,840 - GEMAOFIL_04761 0.61 +0.3 5,250,895 + GEMAOFIL_04761 0.66 -1.2 5,250,896 - GEMAOFIL_04761 0.66 -1.9 5,250,896 - GEMAOFIL_04761 0.66 -0.8 5,250,907 + GEMAOFIL_04761 0.67 -0.1 5,250,916 - GEMAOFIL_04761 0.67 -1.0 5,250,916 - GEMAOFIL_04761 0.67 -0.2 5,250,916 - GEMAOFIL_04761 0.67 -0.8 5,250,916 - GEMAOFIL_04761 0.67 +1.1 5,250,916 - GEMAOFIL_04761 0.67 +0.4 5,250,978 + GEMAOFIL_04761 0.72 -0.2 5,250,978 + GEMAOFIL_04761 0.72 -0.2 5,250,978 + GEMAOFIL_04761 0.72 -0.2 5,250,979 - GEMAOFIL_04761 0.72 -0.1 5,250,979 - GEMAOFIL_04761 0.72 -0.6 5,250,979 - GEMAOFIL_04761 0.72 -0.4 5,251,129 - GEMAOFIL_04761 0.85 -1.1 5,251,156 - GEMAOFIL_04761 0.87 +0.0 5,251,156 - GEMAOFIL_04761 0.87 +0.0 5,251,233 + -0.1 5,251,354 + -2.2 5,251,443 + +0.2 5,251,447 + -2.1 5,251,521 + -0.4 5,251,662 + GEMAOFIL_04762 0.18 -0.2 5,251,662 + GEMAOFIL_04762 0.18 +0.0 5,251,877 + GEMAOFIL_04762 0.31 -0.3 5,252,071 + GEMAOFIL_04762 0.43 +0.6
Or see this region's nucleotide sequence