Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_03249 and GEMAOFIL_03250 overlap by 4 nucleotides GEMAOFIL_03250 and GEMAOFIL_03251 overlap by 12 nucleotides GEMAOFIL_03251 and GEMAOFIL_03252 overlap by 4 nucleotides
GEMAOFIL_03249: GEMAOFIL_03249 - HTH-type transcriptional regulator DmlR, at 3,596,322 to 3,597,230
_03249
GEMAOFIL_03250: GEMAOFIL_03250 - hypothetical protein, at 3,597,227 to 3,597,583
_03250
GEMAOFIL_03251: GEMAOFIL_03251 - hypothetical protein, at 3,597,572 to 3,597,955
_03251
GEMAOFIL_03252: GEMAOFIL_03252 - Undecaprenyl-diphosphatase, at 3,597,952 to 3,598,800
_03252
Position (kb) 3597
3598 Strain fitness (log2 ratio) -1
0
1
2 at 3596.344 kb on - strand at 3596.346 kb on + strand at 3596.347 kb on - strand at 3596.576 kb on + strand, within GEMAOFIL_03249 at 3596.735 kb on + strand, within GEMAOFIL_03249 at 3596.842 kb on + strand, within GEMAOFIL_03249 at 3597.186 kb on + strand at 3597.203 kb on + strand at 3597.204 kb on - strand at 3597.291 kb on - strand, within GEMAOFIL_03250 at 3597.291 kb on - strand, within GEMAOFIL_03250 at 3597.476 kb on + strand, within GEMAOFIL_03250 at 3597.908 kb on + strand, within GEMAOFIL_03251 at 3597.909 kb on - strand, within GEMAOFIL_03251 at 3598.046 kb on + strand, within GEMAOFIL_03252 at 3598.046 kb on + strand, within GEMAOFIL_03252 at 3598.046 kb on + strand, within GEMAOFIL_03252 at 3598.047 kb on - strand, within GEMAOFIL_03252 at 3598.047 kb on - strand, within GEMAOFIL_03252 at 3598.047 kb on - strand, within GEMAOFIL_03252 at 3598.113 kb on + strand, within GEMAOFIL_03252 at 3598.169 kb on + strand, within GEMAOFIL_03252 at 3598.179 kb on - strand, within GEMAOFIL_03252 at 3598.460 kb on + strand, within GEMAOFIL_03252 at 3598.484 kb on - strand, within GEMAOFIL_03252
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,596,344 - -0.3 3,596,346 + -0.3 3,596,347 - +1.2 3,596,576 + GEMAOFIL_03249 0.28 -0.7 3,596,735 + GEMAOFIL_03249 0.45 -1.1 3,596,842 + GEMAOFIL_03249 0.57 -0.0 3,597,186 + -0.4 3,597,203 + +0.0 3,597,204 - -0.2 3,597,291 - GEMAOFIL_03250 0.18 +0.5 3,597,291 - GEMAOFIL_03250 0.18 +0.9 3,597,476 + GEMAOFIL_03250 0.70 +0.0 3,597,908 + GEMAOFIL_03251 0.88 +0.1 3,597,909 - GEMAOFIL_03251 0.88 -0.4 3,598,046 + GEMAOFIL_03252 0.11 +2.1 3,598,046 + GEMAOFIL_03252 0.11 +0.0 3,598,046 + GEMAOFIL_03252 0.11 +0.5 3,598,047 - GEMAOFIL_03252 0.11 -0.5 3,598,047 - GEMAOFIL_03252 0.11 +1.2 3,598,047 - GEMAOFIL_03252 0.11 -0.1 3,598,113 + GEMAOFIL_03252 0.19 +0.1 3,598,169 + GEMAOFIL_03252 0.26 -0.8 3,598,179 - GEMAOFIL_03252 0.27 -0.5 3,598,460 + GEMAOFIL_03252 0.60 +1.1 3,598,484 - GEMAOFIL_03252 0.63 +0.7
Or see this region's nucleotide sequence