Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00548 and GEMAOFIL_00549 are separated by 342 nucleotides GEMAOFIL_00549 and GEMAOFIL_00550 are separated by 143 nucleotides
GEMAOFIL_00548: GEMAOFIL_00548 - Sensory histidine kinase/phosphatase NtrB, at 639,702 to 640,787
_00548
GEMAOFIL_00549: GEMAOFIL_00549 - hypothetical protein, at 641,130 to 641,702
_00549
GEMAOFIL_00550: GEMAOFIL_00550 - Secreted chorismate mutase, at 641,846 to 642,385
_00550
Position (kb) 641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 640.279 kb on + strand, within GEMAOFIL_00548 at 640.280 kb on - strand, within GEMAOFIL_00548 at 640.427 kb on + strand, within GEMAOFIL_00548 at 640.699 kb on + strand at 640.700 kb on - strand at 640.700 kb on - strand at 640.700 kb on - strand at 640.834 kb on - strand at 640.834 kb on - strand at 640.892 kb on + strand at 640.901 kb on - strand at 640.901 kb on - strand at 640.982 kb on + strand at 640.996 kb on - strand at 640.998 kb on - strand at 641.274 kb on + strand, within GEMAOFIL_00549 at 641.275 kb on - strand, within GEMAOFIL_00549 at 641.275 kb on - strand, within GEMAOFIL_00549 at 641.371 kb on + strand, within GEMAOFIL_00549 at 641.379 kb on + strand, within GEMAOFIL_00549 at 641.379 kb on + strand, within GEMAOFIL_00549 at 641.379 kb on + strand, within GEMAOFIL_00549 at 641.381 kb on + strand, within GEMAOFIL_00549 at 641.386 kb on + strand, within GEMAOFIL_00549 at 641.387 kb on - strand, within GEMAOFIL_00549 at 641.411 kb on + strand, within GEMAOFIL_00549 at 641.412 kb on - strand, within GEMAOFIL_00549 at 641.455 kb on + strand, within GEMAOFIL_00549 at 641.455 kb on + strand, within GEMAOFIL_00549 at 641.456 kb on - strand, within GEMAOFIL_00549 at 641.456 kb on - strand, within GEMAOFIL_00549 at 641.578 kb on - strand, within GEMAOFIL_00549 at 641.682 kb on + strand at 641.709 kb on + strand at 641.748 kb on - strand at 641.853 kb on + strand at 642.099 kb on + strand, within GEMAOFIL_00550 at 642.391 kb on - strand at 642.531 kb on + strand at 642.536 kb on + strand at 642.536 kb on + strand at 642.537 kb on - strand at 642.549 kb on - strand at 642.553 kb on + strand at 642.581 kb on + strand at 642.581 kb on + strand at 642.581 kb on + strand at 642.659 kb on + strand at 642.660 kb on - strand at 642.660 kb on - strand at 642.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 640,279 + GEMAOFIL_00548 0.53 -0.6 640,280 - GEMAOFIL_00548 0.53 -0.5 640,427 + GEMAOFIL_00548 0.67 -0.7 640,699 + -0.5 640,700 - -0.3 640,700 - +1.4 640,700 - -0.2 640,834 - -1.7 640,834 - -2.1 640,892 + +0.5 640,901 - -1.3 640,901 - -0.3 640,982 + +0.4 640,996 - -1.0 640,998 - -1.6 641,274 + GEMAOFIL_00549 0.25 -0.5 641,275 - GEMAOFIL_00549 0.25 +0.1 641,275 - GEMAOFIL_00549 0.25 +0.0 641,371 + GEMAOFIL_00549 0.42 -1.8 641,379 + GEMAOFIL_00549 0.43 +0.6 641,379 + GEMAOFIL_00549 0.43 +0.3 641,379 + GEMAOFIL_00549 0.43 +0.7 641,381 + GEMAOFIL_00549 0.44 +0.7 641,386 + GEMAOFIL_00549 0.45 +0.2 641,387 - GEMAOFIL_00549 0.45 +0.1 641,411 + GEMAOFIL_00549 0.49 -1.0 641,412 - GEMAOFIL_00549 0.49 -0.4 641,455 + GEMAOFIL_00549 0.57 -0.1 641,455 + GEMAOFIL_00549 0.57 -0.1 641,456 - GEMAOFIL_00549 0.57 -0.1 641,456 - GEMAOFIL_00549 0.57 +0.1 641,578 - GEMAOFIL_00549 0.78 +0.4 641,682 + -0.3 641,709 + -0.0 641,748 - -0.5 641,853 + +0.8 642,099 + GEMAOFIL_00550 0.47 -0.7 642,391 - +0.8 642,531 + -0.6 642,536 + +0.8 642,536 + -0.0 642,537 - -0.5 642,549 - -0.2 642,553 + -0.5 642,581 + +0.7 642,581 + +0.2 642,581 + -0.9 642,659 + -0.5 642,660 - +0.5 642,660 - -1.8 642,660 - +0.3
Or see this region's nucleotide sequence