Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_05022

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_05020 and GEMAOFIL_05021 are separated by 82 nucleotidesGEMAOFIL_05021 and GEMAOFIL_05022 are separated by 11 nucleotidesGEMAOFIL_05022 and GEMAOFIL_05023 are separated by 1 nucleotides GEMAOFIL_05020: GEMAOFIL_05020 - Ribosomal RNA large subunit methyltransferase G, at 5,538,668 to 5,539,792 _05020 GEMAOFIL_05021: GEMAOFIL_05021 - hypothetical protein, at 5,539,875 to 5,540,042 _05021 GEMAOFIL_05022: GEMAOFIL_05022 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 5,540,054 to 5,541,061 _05022 GEMAOFIL_05023: GEMAOFIL_05023 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 5,541,063 to 5,542,517 _05023 Position (kb) 5540 5541 5542Strain fitness (log2 ratio) -2 -1 0 1at 5539.145 kb on + strand, within GEMAOFIL_05020at 5539.145 kb on + strand, within GEMAOFIL_05020at 5539.147 kb on + strand, within GEMAOFIL_05020at 5539.148 kb on - strand, within GEMAOFIL_05020at 5539.249 kb on + strand, within GEMAOFIL_05020at 5539.249 kb on + strand, within GEMAOFIL_05020at 5539.250 kb on - strand, within GEMAOFIL_05020at 5539.293 kb on + strand, within GEMAOFIL_05020at 5539.294 kb on - strand, within GEMAOFIL_05020at 5539.399 kb on - strand, within GEMAOFIL_05020at 5539.439 kb on + strand, within GEMAOFIL_05020at 5539.440 kb on - strand, within GEMAOFIL_05020at 5539.440 kb on - strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.460 kb on + strand, within GEMAOFIL_05020at 5539.461 kb on - strand, within GEMAOFIL_05020at 5539.461 kb on - strand, within GEMAOFIL_05020at 5539.461 kb on - strand, within GEMAOFIL_05020at 5539.462 kb on + strand, within GEMAOFIL_05020at 5539.462 kb on + strand, within GEMAOFIL_05020at 5539.463 kb on - strand, within GEMAOFIL_05020at 5539.679 kb on + strand, within GEMAOFIL_05020at 5539.679 kb on + strand, within GEMAOFIL_05020at 5539.679 kb on + strand, within GEMAOFIL_05020at 5539.683 kb on + strandat 5539.683 kb on + strandat 5539.683 kb on + strandat 5539.683 kb on + strandat 5540.055 kb on + strandat 5540.056 kb on - strandat 5540.093 kb on + strandat 5540.093 kb on + strandat 5540.094 kb on - strandat 5540.097 kb on + strandat 5540.098 kb on - strandat 5540.098 kb on - strandat 5540.098 kb on - strandat 5540.101 kb on - strandat 5540.302 kb on + strand, within GEMAOFIL_05022at 5540.328 kb on + strand, within GEMAOFIL_05022at 5540.328 kb on + strand, within GEMAOFIL_05022at 5540.329 kb on - strand, within GEMAOFIL_05022at 5540.343 kb on - strand, within GEMAOFIL_05022at 5540.431 kb on + strand, within GEMAOFIL_05022at 5540.440 kb on + strand, within GEMAOFIL_05022at 5540.440 kb on + strand, within GEMAOFIL_05022at 5540.540 kb on + strand, within GEMAOFIL_05022at 5540.551 kb on - strand, within GEMAOFIL_05022at 5540.551 kb on - strand, within GEMAOFIL_05022at 5540.551 kb on - strand, within GEMAOFIL_05022at 5541.004 kb on - strandat 5541.004 kb on - strandat 5541.004 kb on - strandat 5541.004 kb on - strandat 5541.004 kb on - strandat 5541.004 kb on - strandat 5541.156 kb on - strandat 5541.156 kb on - strandat 5541.199 kb on + strandat 5541.199 kb on + strandat 5541.200 kb on - strandat 5541.200 kb on - strandat 5541.236 kb on - strand, within GEMAOFIL_05023at 5541.266 kb on - strand, within GEMAOFIL_05023at 5541.439 kb on + strand, within GEMAOFIL_05023at 5541.440 kb on - strand, within GEMAOFIL_05023at 5541.460 kb on + strand, within GEMAOFIL_05023at 5541.460 kb on + strand, within GEMAOFIL_05023at 5541.460 kb on + strand, within GEMAOFIL_05023at 5541.461 kb on - strand, within GEMAOFIL_05023at 5541.461 kb on - strand, within GEMAOFIL_05023at 5541.461 kb on - strand, within GEMAOFIL_05023at 5541.461 kb on - strand, within GEMAOFIL_05023at 5541.461 kb on - strand, within GEMAOFIL_05023at 5541.664 kb on + strand, within GEMAOFIL_05023at 5541.731 kb on + strand, within GEMAOFIL_05023

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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5,539,145 + GEMAOFIL_05020 0.42 +1.1
5,539,145 + GEMAOFIL_05020 0.42 +0.2
5,539,147 + GEMAOFIL_05020 0.43 +0.1
5,539,148 - GEMAOFIL_05020 0.43 +0.7
5,539,249 + GEMAOFIL_05020 0.52 +1.3
5,539,249 + GEMAOFIL_05020 0.52 +1.6
5,539,250 - GEMAOFIL_05020 0.52 +0.1
5,539,293 + GEMAOFIL_05020 0.56 -0.7
5,539,294 - GEMAOFIL_05020 0.56 -1.9
5,539,399 - GEMAOFIL_05020 0.65 -0.5
5,539,439 + GEMAOFIL_05020 0.69 -0.5
5,539,440 - GEMAOFIL_05020 0.69 -0.6
5,539,440 - GEMAOFIL_05020 0.69 +0.8
5,539,460 + GEMAOFIL_05020 0.70 +1.1
5,539,460 + GEMAOFIL_05020 0.70 -1.1
5,539,460 + GEMAOFIL_05020 0.70 -0.4
5,539,460 + GEMAOFIL_05020 0.70 +0.3
5,539,460 + GEMAOFIL_05020 0.70 -0.5
5,539,460 + GEMAOFIL_05020 0.70 +0.3
5,539,461 - GEMAOFIL_05020 0.70 +0.2
5,539,461 - GEMAOFIL_05020 0.70 -0.2
5,539,461 - GEMAOFIL_05020 0.70 -0.1
5,539,462 + GEMAOFIL_05020 0.71 +0.6
5,539,462 + GEMAOFIL_05020 0.71 -0.4
5,539,463 - GEMAOFIL_05020 0.71 -0.6
5,539,679 + GEMAOFIL_05020 0.90 +0.4
5,539,679 + GEMAOFIL_05020 0.90 +0.2
5,539,679 + GEMAOFIL_05020 0.90 -1.1
5,539,683 + -0.1
5,539,683 + -0.2
5,539,683 + +0.2
5,539,683 + +0.3
5,540,055 + +0.1
5,540,056 - -1.1
5,540,093 + -0.7
5,540,093 + +0.0
5,540,094 - +0.4
5,540,097 + +0.4
5,540,098 - +0.0
5,540,098 - +0.9
5,540,098 - +0.4
5,540,101 - +0.1
5,540,302 + GEMAOFIL_05022 0.25 -0.1
5,540,328 + GEMAOFIL_05022 0.27 -0.3
5,540,328 + GEMAOFIL_05022 0.27 -0.1
5,540,329 - GEMAOFIL_05022 0.27 +0.1
5,540,343 - GEMAOFIL_05022 0.29 +0.4
5,540,431 + GEMAOFIL_05022 0.37 +0.3
5,540,440 + GEMAOFIL_05022 0.38 -0.9
5,540,440 + GEMAOFIL_05022 0.38 +0.3
5,540,540 + GEMAOFIL_05022 0.48 +0.0
5,540,551 - GEMAOFIL_05022 0.49 +1.5
5,540,551 - GEMAOFIL_05022 0.49 +0.5
5,540,551 - GEMAOFIL_05022 0.49 -0.4
5,541,004 - -0.4
5,541,004 - +0.2
5,541,004 - +0.1
5,541,004 - +0.1
5,541,004 - -0.4
5,541,004 - +1.3
5,541,156 - +0.3
5,541,156 - -0.6
5,541,199 + -1.4
5,541,199 + +0.0
5,541,200 - +0.3
5,541,200 - -0.3
5,541,236 - GEMAOFIL_05023 0.12 -0.6
5,541,266 - GEMAOFIL_05023 0.14 -0.1
5,541,439 + GEMAOFIL_05023 0.26 +0.4
5,541,440 - GEMAOFIL_05023 0.26 +0.0
5,541,460 + GEMAOFIL_05023 0.27 +0.4
5,541,460 + GEMAOFIL_05023 0.27 -0.5
5,541,460 + GEMAOFIL_05023 0.27 -1.6
5,541,461 - GEMAOFIL_05023 0.27 -0.3
5,541,461 - GEMAOFIL_05023 0.27 +0.5
5,541,461 - GEMAOFIL_05023 0.27 -0.5
5,541,461 - GEMAOFIL_05023 0.27 -0.3
5,541,461 - GEMAOFIL_05023 0.27 -0.0
5,541,664 + GEMAOFIL_05023 0.41 -0.3
5,541,731 + GEMAOFIL_05023 0.46 +0.4

Or see this region's nucleotide sequence