Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04721 and GEMAOFIL_04722 are separated by 76 nucleotides GEMAOFIL_04722 and GEMAOFIL_04723 are separated by 117 nucleotides GEMAOFIL_04723 and GEMAOFIL_04724 are separated by 136 nucleotides
GEMAOFIL_04721: GEMAOFIL_04721 - hypothetical protein, at 5,202,843 to 5,204,123
_04721
GEMAOFIL_04722: GEMAOFIL_04722 - Single-stranded-DNA-specific exonuclease RecJ, at 5,204,200 to 5,205,909
_04722
GEMAOFIL_04723: GEMAOFIL_04723 - putative protein YaeQ, at 5,206,027 to 5,206,569
_04723
GEMAOFIL_04724: GEMAOFIL_04724 - Succinyl-CoA--L-malate CoA-transferase beta subunit, at 5,206,706 to 5,207,905
_04724
Position (kb)
5204
5205
5206 Strain fitness (log2 ratio)
-1
0
1 at 5203.657 kb on - strand, within GEMAOFIL_04721 at 5203.657 kb on - strand, within GEMAOFIL_04721 at 5203.758 kb on + strand, within GEMAOFIL_04721 at 5203.791 kb on + strand, within GEMAOFIL_04721 at 5203.791 kb on + strand, within GEMAOFIL_04721 at 5203.792 kb on - strand, within GEMAOFIL_04721 at 5203.792 kb on - strand, within GEMAOFIL_04721 at 5204.122 kb on - strand at 5204.425 kb on + strand, within GEMAOFIL_04722 at 5204.426 kb on - strand, within GEMAOFIL_04722 at 5204.867 kb on + strand, within GEMAOFIL_04722 at 5204.941 kb on - strand, within GEMAOFIL_04722 at 5204.941 kb on - strand, within GEMAOFIL_04722 at 5204.941 kb on - strand, within GEMAOFIL_04722 at 5204.941 kb on - strand, within GEMAOFIL_04722 at 5205.165 kb on + strand, within GEMAOFIL_04722 at 5205.165 kb on + strand, within GEMAOFIL_04722 at 5205.166 kb on - strand, within GEMAOFIL_04722 at 5205.579 kb on - strand, within GEMAOFIL_04722 at 5205.579 kb on - strand, within GEMAOFIL_04722 at 5205.754 kb on - strand at 5205.935 kb on + strand at 5205.936 kb on - strand at 5205.936 kb on - strand at 5205.936 kb on - strand at 5206.021 kb on + strand at 5206.204 kb on - strand, within GEMAOFIL_04723 at 5206.378 kb on + strand, within GEMAOFIL_04723 at 5206.506 kb on - strand, within GEMAOFIL_04723 at 5206.581 kb on + strand at 5206.582 kb on - strand at 5206.643 kb on - strand at 5206.661 kb on - strand at 5206.661 kb on - strand at 5206.665 kb on + strand at 5206.665 kb on + strand at 5206.665 kb on + strand at 5206.786 kb on + strand at 5206.786 kb on + strand at 5206.787 kb on - strand at 5206.787 kb on - strand at 5206.787 kb on - strand at 5206.868 kb on + strand, within GEMAOFIL_04724 at 5206.869 kb on - strand, within GEMAOFIL_04724 at 5206.869 kb on - strand, within GEMAOFIL_04724 at 5206.896 kb on + strand, within GEMAOFIL_04724
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,203,657 - GEMAOFIL_04721 0.64 -0.1 5,203,657 - GEMAOFIL_04721 0.64 +0.7 5,203,758 + GEMAOFIL_04721 0.71 -0.4 5,203,791 + GEMAOFIL_04721 0.74 +0.1 5,203,791 + GEMAOFIL_04721 0.74 +0.2 5,203,792 - GEMAOFIL_04721 0.74 +0.5 5,203,792 - GEMAOFIL_04721 0.74 +1.0 5,204,122 - -0.3 5,204,425 + GEMAOFIL_04722 0.13 +0.4 5,204,426 - GEMAOFIL_04722 0.13 +0.5 5,204,867 + GEMAOFIL_04722 0.39 +0.1 5,204,941 - GEMAOFIL_04722 0.43 -0.1 5,204,941 - GEMAOFIL_04722 0.43 +1.0 5,204,941 - GEMAOFIL_04722 0.43 -0.1 5,204,941 - GEMAOFIL_04722 0.43 -0.5 5,205,165 + GEMAOFIL_04722 0.56 -0.2 5,205,165 + GEMAOFIL_04722 0.56 -0.5 5,205,166 - GEMAOFIL_04722 0.56 -0.6 5,205,579 - GEMAOFIL_04722 0.81 -0.4 5,205,579 - GEMAOFIL_04722 0.81 -1.1 5,205,754 - -0.2 5,205,935 + -0.1 5,205,936 - +0.7 5,205,936 - -0.5 5,205,936 - -0.3 5,206,021 + +0.8 5,206,204 - GEMAOFIL_04723 0.33 +0.6 5,206,378 + GEMAOFIL_04723 0.65 +0.2 5,206,506 - GEMAOFIL_04723 0.88 -0.4 5,206,581 + +1.0 5,206,582 - -1.2 5,206,643 - -1.7 5,206,661 - -1.2 5,206,661 - +0.4 5,206,665 + -0.2 5,206,665 + -0.5 5,206,665 + -0.1 5,206,786 + -0.1 5,206,786 + +0.3 5,206,787 - -0.3 5,206,787 - +0.7 5,206,787 - +0.2 5,206,868 + GEMAOFIL_04724 0.14 -0.0 5,206,869 - GEMAOFIL_04724 0.14 +0.1 5,206,869 - GEMAOFIL_04724 0.14 -0.4 5,206,896 + GEMAOFIL_04724 0.16 +0.0
Or see this region's nucleotide sequence