Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_04722

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_04721 and GEMAOFIL_04722 are separated by 76 nucleotidesGEMAOFIL_04722 and GEMAOFIL_04723 are separated by 117 nucleotidesGEMAOFIL_04723 and GEMAOFIL_04724 are separated by 136 nucleotides GEMAOFIL_04721: GEMAOFIL_04721 - hypothetical protein, at 5,202,843 to 5,204,123 _04721 GEMAOFIL_04722: GEMAOFIL_04722 - Single-stranded-DNA-specific exonuclease RecJ, at 5,204,200 to 5,205,909 _04722 GEMAOFIL_04723: GEMAOFIL_04723 - putative protein YaeQ, at 5,206,027 to 5,206,569 _04723 GEMAOFIL_04724: GEMAOFIL_04724 - Succinyl-CoA--L-malate CoA-transferase beta subunit, at 5,206,706 to 5,207,905 _04724 Position (kb) 5204 5205 5206Strain fitness (log2 ratio) -1 0 1at 5203.657 kb on - strand, within GEMAOFIL_04721at 5203.657 kb on - strand, within GEMAOFIL_04721at 5203.758 kb on + strand, within GEMAOFIL_04721at 5203.791 kb on + strand, within GEMAOFIL_04721at 5203.791 kb on + strand, within GEMAOFIL_04721at 5203.792 kb on - strand, within GEMAOFIL_04721at 5203.792 kb on - strand, within GEMAOFIL_04721at 5204.122 kb on - strandat 5204.425 kb on + strand, within GEMAOFIL_04722at 5204.426 kb on - strand, within GEMAOFIL_04722at 5204.867 kb on + strand, within GEMAOFIL_04722at 5204.941 kb on - strand, within GEMAOFIL_04722at 5204.941 kb on - strand, within GEMAOFIL_04722at 5204.941 kb on - strand, within GEMAOFIL_04722at 5204.941 kb on - strand, within GEMAOFIL_04722at 5205.165 kb on + strand, within GEMAOFIL_04722at 5205.165 kb on + strand, within GEMAOFIL_04722at 5205.166 kb on - strand, within GEMAOFIL_04722at 5205.579 kb on - strand, within GEMAOFIL_04722at 5205.579 kb on - strand, within GEMAOFIL_04722at 5205.754 kb on - strandat 5205.935 kb on + strandat 5205.936 kb on - strandat 5205.936 kb on - strandat 5205.936 kb on - strandat 5206.021 kb on + strandat 5206.204 kb on - strand, within GEMAOFIL_04723at 5206.378 kb on + strand, within GEMAOFIL_04723at 5206.506 kb on - strand, within GEMAOFIL_04723at 5206.581 kb on + strandat 5206.582 kb on - strandat 5206.643 kb on - strandat 5206.661 kb on - strandat 5206.661 kb on - strandat 5206.665 kb on + strandat 5206.665 kb on + strandat 5206.665 kb on + strandat 5206.786 kb on + strandat 5206.786 kb on + strandat 5206.787 kb on - strandat 5206.787 kb on - strandat 5206.787 kb on - strandat 5206.868 kb on + strand, within GEMAOFIL_04724at 5206.869 kb on - strand, within GEMAOFIL_04724at 5206.869 kb on - strand, within GEMAOFIL_04724at 5206.896 kb on + strand, within GEMAOFIL_04724

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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5,203,657 - GEMAOFIL_04721 0.64 -0.1
5,203,657 - GEMAOFIL_04721 0.64 +0.7
5,203,758 + GEMAOFIL_04721 0.71 -0.4
5,203,791 + GEMAOFIL_04721 0.74 +0.1
5,203,791 + GEMAOFIL_04721 0.74 +0.2
5,203,792 - GEMAOFIL_04721 0.74 +0.5
5,203,792 - GEMAOFIL_04721 0.74 +1.0
5,204,122 - -0.3
5,204,425 + GEMAOFIL_04722 0.13 +0.4
5,204,426 - GEMAOFIL_04722 0.13 +0.5
5,204,867 + GEMAOFIL_04722 0.39 +0.1
5,204,941 - GEMAOFIL_04722 0.43 -0.1
5,204,941 - GEMAOFIL_04722 0.43 +1.0
5,204,941 - GEMAOFIL_04722 0.43 -0.1
5,204,941 - GEMAOFIL_04722 0.43 -0.5
5,205,165 + GEMAOFIL_04722 0.56 -0.2
5,205,165 + GEMAOFIL_04722 0.56 -0.5
5,205,166 - GEMAOFIL_04722 0.56 -0.6
5,205,579 - GEMAOFIL_04722 0.81 -0.4
5,205,579 - GEMAOFIL_04722 0.81 -1.1
5,205,754 - -0.2
5,205,935 + -0.1
5,205,936 - +0.7
5,205,936 - -0.5
5,205,936 - -0.3
5,206,021 + +0.8
5,206,204 - GEMAOFIL_04723 0.33 +0.6
5,206,378 + GEMAOFIL_04723 0.65 +0.2
5,206,506 - GEMAOFIL_04723 0.88 -0.4
5,206,581 + +1.0
5,206,582 - -1.2
5,206,643 - -1.7
5,206,661 - -1.2
5,206,661 - +0.4
5,206,665 + -0.2
5,206,665 + -0.5
5,206,665 + -0.1
5,206,786 + -0.1
5,206,786 + +0.3
5,206,787 - -0.3
5,206,787 - +0.7
5,206,787 - +0.2
5,206,868 + GEMAOFIL_04724 0.14 -0.0
5,206,869 - GEMAOFIL_04724 0.14 +0.1
5,206,869 - GEMAOFIL_04724 0.14 -0.4
5,206,896 + GEMAOFIL_04724 0.16 +0.0

Or see this region's nucleotide sequence