Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04438 and GEMAOFIL_04439 are separated by 23 nucleotides GEMAOFIL_04439 and GEMAOFIL_04440 overlap by 14 nucleotides GEMAOFIL_04440 and GEMAOFIL_04441 are separated by 759 nucleotides
GEMAOFIL_04438: GEMAOFIL_04438 - hypothetical protein, at 4,911,682 to 4,912,665
_04438
GEMAOFIL_04439: GEMAOFIL_04439 - Pyrophosphatase PpaX, at 4,912,689 to 4,913,351
_04439
GEMAOFIL_04440: GEMAOFIL_04440 - Ribosomal large subunit pseudouridine synthase C, at 4,913,338 to 4,914,297
_04440
GEMAOFIL_04441: GEMAOFIL_04441 - Ribonuclease E, at 4,915,057 to 4,918,149
_04441
Position (kb) 4913
4914
4915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4912.517 kb on + strand, within GEMAOFIL_04438 at 4912.517 kb on + strand, within GEMAOFIL_04438 at 4912.518 kb on - strand, within GEMAOFIL_04438 at 4912.518 kb on - strand, within GEMAOFIL_04438 at 4912.518 kb on - strand, within GEMAOFIL_04438 at 4912.521 kb on + strand, within GEMAOFIL_04438 at 4912.521 kb on + strand, within GEMAOFIL_04438 at 4912.522 kb on - strand, within GEMAOFIL_04438 at 4912.684 kb on - strand at 4912.684 kb on - strand at 4912.684 kb on - strand at 4912.686 kb on + strand at 4912.686 kb on + strand at 4912.687 kb on - strand at 4912.754 kb on - strand at 4912.961 kb on - strand, within GEMAOFIL_04439 at 4912.961 kb on - strand, within GEMAOFIL_04439 at 4912.961 kb on - strand, within GEMAOFIL_04439 at 4913.114 kb on - strand, within GEMAOFIL_04439 at 4913.170 kb on + strand, within GEMAOFIL_04439 at 4913.172 kb on + strand, within GEMAOFIL_04439 at 4913.172 kb on + strand, within GEMAOFIL_04439 at 4913.173 kb on - strand, within GEMAOFIL_04439 at 4913.335 kb on + strand at 4913.441 kb on + strand, within GEMAOFIL_04440 at 4913.442 kb on - strand, within GEMAOFIL_04440 at 4913.766 kb on - strand, within GEMAOFIL_04440 at 4914.239 kb on + strand at 4914.239 kb on + strand at 4914.338 kb on - strand at 4914.350 kb on + strand at 4914.391 kb on + strand at 4914.482 kb on + strand at 4914.482 kb on + strand at 4914.534 kb on + strand at 4914.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,912,517 + GEMAOFIL_04438 0.85 -1.0 4,912,517 + GEMAOFIL_04438 0.85 -0.1 4,912,518 - GEMAOFIL_04438 0.85 +0.5 4,912,518 - GEMAOFIL_04438 0.85 +0.4 4,912,518 - GEMAOFIL_04438 0.85 -0.8 4,912,521 + GEMAOFIL_04438 0.85 +0.3 4,912,521 + GEMAOFIL_04438 0.85 +1.2 4,912,522 - GEMAOFIL_04438 0.85 +0.6 4,912,684 - +1.4 4,912,684 - +0.8 4,912,684 - -2.0 4,912,686 + +0.1 4,912,686 + -0.7 4,912,687 - -0.1 4,912,754 - +0.1 4,912,961 - GEMAOFIL_04439 0.41 +0.2 4,912,961 - GEMAOFIL_04439 0.41 +0.0 4,912,961 - GEMAOFIL_04439 0.41 +0.4 4,913,114 - GEMAOFIL_04439 0.64 -0.4 4,913,170 + GEMAOFIL_04439 0.73 +0.3 4,913,172 + GEMAOFIL_04439 0.73 +1.8 4,913,172 + GEMAOFIL_04439 0.73 -2.8 4,913,173 - GEMAOFIL_04439 0.73 +0.6 4,913,335 + -0.8 4,913,441 + GEMAOFIL_04440 0.11 +0.2 4,913,442 - GEMAOFIL_04440 0.11 +0.6 4,913,766 - GEMAOFIL_04440 0.45 +0.7 4,914,239 + -0.1 4,914,239 + -0.3 4,914,338 - -1.2 4,914,350 + -0.3 4,914,391 + -0.9 4,914,482 + +0.2 4,914,482 + +0.8 4,914,534 + +1.6 4,914,627 + -0.4
Or see this region's nucleotide sequence