Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_03373

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_03371 and GEMAOFIL_03372 are separated by 10 nucleotidesGEMAOFIL_03372 and GEMAOFIL_03373 are separated by 105 nucleotidesGEMAOFIL_03373 and GEMAOFIL_03374 are separated by 16 nucleotidesGEMAOFIL_03374 and GEMAOFIL_03375 overlap by 4 nucleotides GEMAOFIL_03371: GEMAOFIL_03371 - D-threonine aldolase, at 3,747,965 to 3,749,173 _03371 GEMAOFIL_03372: GEMAOFIL_03372 - HTH-type transcriptional regulator XynR, at 3,749,184 to 3,749,948 _03372 GEMAOFIL_03373: GEMAOFIL_03373 - 2-iminobutanoate/2-iminopropanoate deaminase, at 3,750,054 to 3,750,443 _03373 GEMAOFIL_03374: GEMAOFIL_03374 - Glutamine transport ATP-binding protein GlnQ, at 3,750,460 to 3,751,242 _03374 GEMAOFIL_03375: GEMAOFIL_03375 - L-cystine transport system permease protein TcyB, at 3,751,239 to 3,751,901 _03375 Position (kb) 3750 3751Strain fitness (log2 ratio) -2 -1 0 1at 3749.387 kb on + strand, within GEMAOFIL_03372at 3749.726 kb on - strand, within GEMAOFIL_03372at 3750.110 kb on + strand, within GEMAOFIL_03373at 3750.110 kb on + strand, within GEMAOFIL_03373at 3750.158 kb on - strand, within GEMAOFIL_03373at 3750.278 kb on + strand, within GEMAOFIL_03373at 3750.434 kb on + strandat 3750.518 kb on - strandat 3750.565 kb on + strand, within GEMAOFIL_03374at 3750.566 kb on - strand, within GEMAOFIL_03374at 3750.815 kb on - strand, within GEMAOFIL_03374at 3751.014 kb on + strand, within GEMAOFIL_03374at 3751.016 kb on + strand, within GEMAOFIL_03374at 3751.184 kb on + strandat 3751.268 kb on - strandat 3751.292 kb on - strandat 3751.310 kb on + strand, within GEMAOFIL_03375at 3751.311 kb on - strand, within GEMAOFIL_03375at 3751.311 kb on - strand, within GEMAOFIL_03375at 3751.311 kb on - strand, within GEMAOFIL_03375at 3751.327 kb on + strand, within GEMAOFIL_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,749,387 + GEMAOFIL_03372 0.27 +0.7
3,749,726 - GEMAOFIL_03372 0.71 -0.2
3,750,110 + GEMAOFIL_03373 0.14 -0.6
3,750,110 + GEMAOFIL_03373 0.14 +0.7
3,750,158 - GEMAOFIL_03373 0.27 -0.1
3,750,278 + GEMAOFIL_03373 0.57 -0.4
3,750,434 + -0.3
3,750,518 - -0.5
3,750,565 + GEMAOFIL_03374 0.13 -0.6
3,750,566 - GEMAOFIL_03374 0.14 -0.9
3,750,815 - GEMAOFIL_03374 0.45 +0.7
3,751,014 + GEMAOFIL_03374 0.71 +0.2
3,751,016 + GEMAOFIL_03374 0.71 +0.1
3,751,184 + -0.5
3,751,268 - -0.0
3,751,292 - -0.0
3,751,310 + GEMAOFIL_03375 0.11 +0.5
3,751,311 - GEMAOFIL_03375 0.11 -2.5
3,751,311 - GEMAOFIL_03375 0.11 -0.4
3,751,311 - GEMAOFIL_03375 0.11 -0.6
3,751,327 + GEMAOFIL_03375 0.13 -2.3

Or see this region's nucleotide sequence