Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_02725

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_02723 and GEMAOFIL_02724 overlap by 1 nucleotidesGEMAOFIL_02724 and GEMAOFIL_02725 overlap by 4 nucleotidesGEMAOFIL_02725 and GEMAOFIL_02726 are separated by 11 nucleotidesGEMAOFIL_02726 and GEMAOFIL_02727 overlap by 4 nucleotides GEMAOFIL_02723: GEMAOFIL_02723 - NAD kinase, at 2,983,692 to 2,984,582 _02723 GEMAOFIL_02724: GEMAOFIL_02724 - 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical' transl_table=11, at 2,984,582 to 2,985,553 _02724 GEMAOFIL_02725: GEMAOFIL_02725 - Rhomboid protease GlpG, at 2,985,550 to 2,986,422 _02725 GEMAOFIL_02726: GEMAOFIL_02726 - hypothetical protein, at 2,986,434 to 2,986,694 _02726 GEMAOFIL_02727: GEMAOFIL_02727 - hypothetical protein, at 2,986,691 to 2,987,521 _02727 Position (kb) 2985 2986 2987Strain fitness (log2 ratio) -3 -2 -1 0 1at 2984.599 kb on + strandat 2984.600 kb on - strandat 2984.603 kb on + strandat 2984.978 kb on + strand, within GEMAOFIL_02724at 2985.260 kb on + strand, within GEMAOFIL_02724at 2985.260 kb on + strand, within GEMAOFIL_02724at 2985.441 kb on - strand, within GEMAOFIL_02724at 2985.456 kb on - strandat 2985.555 kb on + strandat 2985.566 kb on + strandat 2985.567 kb on - strandat 2985.666 kb on - strand, within GEMAOFIL_02725at 2985.709 kb on + strand, within GEMAOFIL_02725at 2985.926 kb on - strand, within GEMAOFIL_02725at 2986.059 kb on + strand, within GEMAOFIL_02725at 2986.126 kb on + strand, within GEMAOFIL_02725at 2986.136 kb on - strand, within GEMAOFIL_02725at 2986.184 kb on - strand, within GEMAOFIL_02725at 2986.184 kb on - strand, within GEMAOFIL_02725at 2986.413 kb on + strandat 2986.480 kb on - strand, within GEMAOFIL_02726at 2986.889 kb on + strand, within GEMAOFIL_02727at 2987.025 kb on - strand, within GEMAOFIL_02727

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,984,599 + -0.1
2,984,600 - +0.2
2,984,603 + -0.1
2,984,978 + GEMAOFIL_02724 0.41 -1.1
2,985,260 + GEMAOFIL_02724 0.70 +0.9
2,985,260 + GEMAOFIL_02724 0.70 -1.9
2,985,441 - GEMAOFIL_02724 0.88 +0.7
2,985,456 - +0.0
2,985,555 + +0.2
2,985,566 + +0.6
2,985,567 - +1.4
2,985,666 - GEMAOFIL_02725 0.13 -0.2
2,985,709 + GEMAOFIL_02725 0.18 -2.8
2,985,926 - GEMAOFIL_02725 0.43 -1.3
2,986,059 + GEMAOFIL_02725 0.58 -0.4
2,986,126 + GEMAOFIL_02725 0.66 -0.5
2,986,136 - GEMAOFIL_02725 0.67 +0.2
2,986,184 - GEMAOFIL_02725 0.73 -0.3
2,986,184 - GEMAOFIL_02725 0.73 +0.3
2,986,413 + -1.1
2,986,480 - GEMAOFIL_02726 0.18 -0.8
2,986,889 + GEMAOFIL_02727 0.24 +0.8
2,987,025 - GEMAOFIL_02727 0.40 +0.2

Or see this region's nucleotide sequence