Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_02437

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_02436 and GEMAOFIL_02437 are separated by 106 nucleotidesGEMAOFIL_02437 and GEMAOFIL_02438 overlap by 4 nucleotides GEMAOFIL_02436: GEMAOFIL_02436 - Hca operon transcriptional activator HcaR, at 2,658,097 to 2,658,996 _02436 GEMAOFIL_02437: GEMAOFIL_02437 - Quinolone resistance transporter, at 2,659,103 to 2,660,470 _02437 GEMAOFIL_02438: GEMAOFIL_02438 - Glucarate dehydratase, at 2,660,467 to 2,661,741 _02438 Position (kb) 2659 2660 2661Strain fitness (log2 ratio) -3 -2 -1 0 1at 2658.413 kb on + strand, within GEMAOFIL_02436at 2658.474 kb on + strand, within GEMAOFIL_02436at 2658.496 kb on + strand, within GEMAOFIL_02436at 2658.574 kb on - strand, within GEMAOFIL_02436at 2658.597 kb on - strand, within GEMAOFIL_02436at 2658.606 kb on - strand, within GEMAOFIL_02436at 2658.686 kb on + strand, within GEMAOFIL_02436at 2658.687 kb on - strand, within GEMAOFIL_02436at 2658.710 kb on - strand, within GEMAOFIL_02436at 2658.711 kb on + strand, within GEMAOFIL_02436at 2659.209 kb on - strandat 2659.445 kb on + strand, within GEMAOFIL_02437at 2659.503 kb on - strand, within GEMAOFIL_02437at 2659.683 kb on + strand, within GEMAOFIL_02437at 2659.871 kb on - strand, within GEMAOFIL_02437at 2659.898 kb on + strand, within GEMAOFIL_02437at 2660.009 kb on + strand, within GEMAOFIL_02437at 2660.797 kb on + strand, within GEMAOFIL_02438at 2660.944 kb on + strand, within GEMAOFIL_02438

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,658,413 + GEMAOFIL_02436 0.35 -0.6
2,658,474 + GEMAOFIL_02436 0.42 -0.7
2,658,496 + GEMAOFIL_02436 0.44 -0.5
2,658,574 - GEMAOFIL_02436 0.53 +1.1
2,658,597 - GEMAOFIL_02436 0.56 -2.9
2,658,606 - GEMAOFIL_02436 0.57 -1.1
2,658,686 + GEMAOFIL_02436 0.65 -1.7
2,658,687 - GEMAOFIL_02436 0.66 +1.6
2,658,710 - GEMAOFIL_02436 0.68 +0.1
2,658,711 + GEMAOFIL_02436 0.68 +0.9
2,659,209 - +0.1
2,659,445 + GEMAOFIL_02437 0.25 -0.1
2,659,503 - GEMAOFIL_02437 0.29 +0.0
2,659,683 + GEMAOFIL_02437 0.42 +0.1
2,659,871 - GEMAOFIL_02437 0.56 +0.2
2,659,898 + GEMAOFIL_02437 0.58 -1.7
2,660,009 + GEMAOFIL_02437 0.66 -0.0
2,660,797 + GEMAOFIL_02438 0.26 -2.5
2,660,944 + GEMAOFIL_02438 0.37 +0.4

Or see this region's nucleotide sequence