Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_01705

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_01703 and GEMAOFIL_01704 are separated by 58 nucleotidesGEMAOFIL_01704 and GEMAOFIL_01705 are separated by 2 nucleotidesGEMAOFIL_01705 and GEMAOFIL_01706 overlap by 26 nucleotidesGEMAOFIL_01706 and GEMAOFIL_01707 are separated by 13 nucleotides GEMAOFIL_01703: GEMAOFIL_01703 - ABC transporter glutamine-binding protein GlnH, at 1,886,361 to 1,887,185 _01703 GEMAOFIL_01704: GEMAOFIL_01704 - putative glutamine ABC transporter permease protein GlnP, at 1,887,244 to 1,887,945 _01704 GEMAOFIL_01705: GEMAOFIL_01705 - putative glutamine ABC transporter permease protein GlnP, at 1,887,948 to 1,888,685 _01705 GEMAOFIL_01706: GEMAOFIL_01706 - Glutamine transport ATP-binding protein GlnQ, at 1,888,660 to 1,889,388 _01706 GEMAOFIL_01707: GEMAOFIL_01707 - D-amino acid dehydrogenase 1, at 1,889,402 to 1,890,661 _01707 Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -1 0 1 2at 1886.951 kb on + strand, within GEMAOFIL_01703at 1886.980 kb on + strand, within GEMAOFIL_01703at 1886.981 kb on - strand, within GEMAOFIL_01703at 1887.081 kb on - strand, within GEMAOFIL_01703at 1887.142 kb on - strandat 1887.155 kb on + strandat 1887.232 kb on - strandat 1887.393 kb on - strand, within GEMAOFIL_01704at 1887.439 kb on + strand, within GEMAOFIL_01704at 1887.452 kb on + strand, within GEMAOFIL_01704at 1887.452 kb on + strand, within GEMAOFIL_01704at 1887.471 kb on - strand, within GEMAOFIL_01704at 1887.580 kb on - strand, within GEMAOFIL_01704at 1887.866 kb on + strand, within GEMAOFIL_01704at 1888.144 kb on - strand, within GEMAOFIL_01705at 1888.196 kb on - strand, within GEMAOFIL_01705at 1888.203 kb on - strand, within GEMAOFIL_01705at 1888.210 kb on + strand, within GEMAOFIL_01705at 1888.255 kb on + strand, within GEMAOFIL_01705at 1888.272 kb on + strand, within GEMAOFIL_01705at 1888.325 kb on - strand, within GEMAOFIL_01705at 1888.415 kb on - strand, within GEMAOFIL_01705at 1888.734 kb on + strand, within GEMAOFIL_01706at 1888.788 kb on + strand, within GEMAOFIL_01706at 1889.004 kb on + strand, within GEMAOFIL_01706at 1889.018 kb on + strand, within GEMAOFIL_01706at 1889.019 kb on - strand, within GEMAOFIL_01706at 1889.019 kb on - strand, within GEMAOFIL_01706at 1889.192 kb on + strand, within GEMAOFIL_01706at 1889.217 kb on + strand, within GEMAOFIL_01706at 1889.218 kb on - strand, within GEMAOFIL_01706at 1889.223 kb on + strand, within GEMAOFIL_01706at 1889.223 kb on + strand, within GEMAOFIL_01706at 1889.289 kb on + strand, within GEMAOFIL_01706at 1889.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,886,951 + GEMAOFIL_01703 0.72 -1.6
1,886,980 + GEMAOFIL_01703 0.75 -0.1
1,886,981 - GEMAOFIL_01703 0.75 +0.7
1,887,081 - GEMAOFIL_01703 0.87 +0.3
1,887,142 - -0.2
1,887,155 + +0.4
1,887,232 - -0.1
1,887,393 - GEMAOFIL_01704 0.21 -0.1
1,887,439 + GEMAOFIL_01704 0.28 -0.5
1,887,452 + GEMAOFIL_01704 0.30 -0.4
1,887,452 + GEMAOFIL_01704 0.30 +0.3
1,887,471 - GEMAOFIL_01704 0.32 +0.3
1,887,580 - GEMAOFIL_01704 0.48 +0.2
1,887,866 + GEMAOFIL_01704 0.89 +1.8
1,888,144 - GEMAOFIL_01705 0.27 -0.1
1,888,196 - GEMAOFIL_01705 0.34 +0.4
1,888,203 - GEMAOFIL_01705 0.35 +0.8
1,888,210 + GEMAOFIL_01705 0.36 -0.0
1,888,255 + GEMAOFIL_01705 0.42 -0.0
1,888,272 + GEMAOFIL_01705 0.44 -0.4
1,888,325 - GEMAOFIL_01705 0.51 +0.6
1,888,415 - GEMAOFIL_01705 0.63 +0.6
1,888,734 + GEMAOFIL_01706 0.10 +0.8
1,888,788 + GEMAOFIL_01706 0.18 -1.0
1,889,004 + GEMAOFIL_01706 0.47 -1.5
1,889,018 + GEMAOFIL_01706 0.49 -0.1
1,889,019 - GEMAOFIL_01706 0.49 -1.4
1,889,019 - GEMAOFIL_01706 0.49 +0.4
1,889,192 + GEMAOFIL_01706 0.73 -1.1
1,889,217 + GEMAOFIL_01706 0.76 -0.7
1,889,218 - GEMAOFIL_01706 0.77 -0.8
1,889,223 + GEMAOFIL_01706 0.77 -0.3
1,889,223 + GEMAOFIL_01706 0.77 -0.5
1,889,289 + GEMAOFIL_01706 0.86 -0.2
1,889,375 + -1.1

Or see this region's nucleotide sequence