Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_01703 and GEMAOFIL_01704 are separated by 58 nucleotides GEMAOFIL_01704 and GEMAOFIL_01705 are separated by 2 nucleotides GEMAOFIL_01705 and GEMAOFIL_01706 overlap by 26 nucleotides GEMAOFIL_01706 and GEMAOFIL_01707 are separated by 13 nucleotides
GEMAOFIL_01703: GEMAOFIL_01703 - ABC transporter glutamine-binding protein GlnH, at 1,886,361 to 1,887,185
_01703
GEMAOFIL_01704: GEMAOFIL_01704 - putative glutamine ABC transporter permease protein GlnP, at 1,887,244 to 1,887,945
_01704
GEMAOFIL_01705: GEMAOFIL_01705 - putative glutamine ABC transporter permease protein GlnP, at 1,887,948 to 1,888,685
_01705
GEMAOFIL_01706: GEMAOFIL_01706 - Glutamine transport ATP-binding protein GlnQ, at 1,888,660 to 1,889,388
_01706
GEMAOFIL_01707: GEMAOFIL_01707 - D-amino acid dehydrogenase 1, at 1,889,402 to 1,890,661
_01707
Position (kb)
1887
1888
1889 Strain fitness (log2 ratio)
-1
0
1
2 at 1886.951 kb on + strand, within GEMAOFIL_01703 at 1886.980 kb on + strand, within GEMAOFIL_01703 at 1886.981 kb on - strand, within GEMAOFIL_01703 at 1887.081 kb on - strand, within GEMAOFIL_01703 at 1887.142 kb on - strand at 1887.155 kb on + strand at 1887.232 kb on - strand at 1887.393 kb on - strand, within GEMAOFIL_01704 at 1887.439 kb on + strand, within GEMAOFIL_01704 at 1887.452 kb on + strand, within GEMAOFIL_01704 at 1887.452 kb on + strand, within GEMAOFIL_01704 at 1887.471 kb on - strand, within GEMAOFIL_01704 at 1887.580 kb on - strand, within GEMAOFIL_01704 at 1887.866 kb on + strand, within GEMAOFIL_01704 at 1888.144 kb on - strand, within GEMAOFIL_01705 at 1888.196 kb on - strand, within GEMAOFIL_01705 at 1888.203 kb on - strand, within GEMAOFIL_01705 at 1888.210 kb on + strand, within GEMAOFIL_01705 at 1888.255 kb on + strand, within GEMAOFIL_01705 at 1888.272 kb on + strand, within GEMAOFIL_01705 at 1888.325 kb on - strand, within GEMAOFIL_01705 at 1888.415 kb on - strand, within GEMAOFIL_01705 at 1888.734 kb on + strand, within GEMAOFIL_01706 at 1888.788 kb on + strand, within GEMAOFIL_01706 at 1889.004 kb on + strand, within GEMAOFIL_01706 at 1889.018 kb on + strand, within GEMAOFIL_01706 at 1889.019 kb on - strand, within GEMAOFIL_01706 at 1889.019 kb on - strand, within GEMAOFIL_01706 at 1889.192 kb on + strand, within GEMAOFIL_01706 at 1889.217 kb on + strand, within GEMAOFIL_01706 at 1889.218 kb on - strand, within GEMAOFIL_01706 at 1889.223 kb on + strand, within GEMAOFIL_01706 at 1889.223 kb on + strand, within GEMAOFIL_01706 at 1889.289 kb on + strand, within GEMAOFIL_01706 at 1889.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,886,951 + GEMAOFIL_01703 0.72 -1.6 1,886,980 + GEMAOFIL_01703 0.75 -0.1 1,886,981 - GEMAOFIL_01703 0.75 +0.7 1,887,081 - GEMAOFIL_01703 0.87 +0.3 1,887,142 - -0.2 1,887,155 + +0.4 1,887,232 - -0.1 1,887,393 - GEMAOFIL_01704 0.21 -0.1 1,887,439 + GEMAOFIL_01704 0.28 -0.5 1,887,452 + GEMAOFIL_01704 0.30 -0.4 1,887,452 + GEMAOFIL_01704 0.30 +0.3 1,887,471 - GEMAOFIL_01704 0.32 +0.3 1,887,580 - GEMAOFIL_01704 0.48 +0.2 1,887,866 + GEMAOFIL_01704 0.89 +1.8 1,888,144 - GEMAOFIL_01705 0.27 -0.1 1,888,196 - GEMAOFIL_01705 0.34 +0.4 1,888,203 - GEMAOFIL_01705 0.35 +0.8 1,888,210 + GEMAOFIL_01705 0.36 -0.0 1,888,255 + GEMAOFIL_01705 0.42 -0.0 1,888,272 + GEMAOFIL_01705 0.44 -0.4 1,888,325 - GEMAOFIL_01705 0.51 +0.6 1,888,415 - GEMAOFIL_01705 0.63 +0.6 1,888,734 + GEMAOFIL_01706 0.10 +0.8 1,888,788 + GEMAOFIL_01706 0.18 -1.0 1,889,004 + GEMAOFIL_01706 0.47 -1.5 1,889,018 + GEMAOFIL_01706 0.49 -0.1 1,889,019 - GEMAOFIL_01706 0.49 -1.4 1,889,019 - GEMAOFIL_01706 0.49 +0.4 1,889,192 + GEMAOFIL_01706 0.73 -1.1 1,889,217 + GEMAOFIL_01706 0.76 -0.7 1,889,218 - GEMAOFIL_01706 0.77 -0.8 1,889,223 + GEMAOFIL_01706 0.77 -0.3 1,889,223 + GEMAOFIL_01706 0.77 -0.5 1,889,289 + GEMAOFIL_01706 0.86 -0.2 1,889,375 + -1.1
Or see this region's nucleotide sequence