Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00980

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00978 and GEMAOFIL_00979 are separated by 129 nucleotidesGEMAOFIL_00979 and GEMAOFIL_00980 are separated by 76 nucleotidesGEMAOFIL_00980 and GEMAOFIL_00981 overlap by 4 nucleotidesGEMAOFIL_00981 and GEMAOFIL_00982 overlap by 4 nucleotidesGEMAOFIL_00982 and GEMAOFIL_00983 overlap by 4 nucleotides GEMAOFIL_00978: GEMAOFIL_00978 - hypothetical protein, at 1,118,073 to 1,118,702 _00978 GEMAOFIL_00979: GEMAOFIL_00979 - hypothetical protein, at 1,118,832 to 1,119,521 _00979 GEMAOFIL_00980: GEMAOFIL_00980 - hypothetical protein, at 1,119,598 to 1,119,813 _00980 GEMAOFIL_00981: GEMAOFIL_00981 - DNA gyrase inhibitor YacG, at 1,119,810 to 1,120,010 _00981 GEMAOFIL_00982: GEMAOFIL_00982 - Dephospho-CoA kinase, at 1,120,007 to 1,120,630 _00982 GEMAOFIL_00983: GEMAOFIL_00983 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 1,120,627 to 1,121,493 _00983 Position (kb) 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2at 1118.687 kb on - strandat 1118.848 kb on + strandat 1118.849 kb on - strandat 1118.886 kb on + strandat 1119.034 kb on - strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.252 kb on - strand, within GEMAOFIL_00979at 1119.376 kb on - strand, within GEMAOFIL_00979at 1119.408 kb on - strand, within GEMAOFIL_00979at 1119.607 kb on + strandat 1119.630 kb on - strand, within GEMAOFIL_00980at 1119.760 kb on + strand, within GEMAOFIL_00980at 1119.761 kb on - strand, within GEMAOFIL_00980at 1119.793 kb on + strandat 1119.793 kb on + strandat 1119.793 kb on + strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.801 kb on + strandat 1120.030 kb on + strandat 1120.031 kb on - strandat 1120.031 kb on - strandat 1120.652 kb on + strandat 1120.653 kb on - strandat 1120.653 kb on - strandat 1120.664 kb on - strandat 1120.709 kb on + strandat 1120.709 kb on + strandat 1120.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,118,687 - -0.2
1,118,848 + +0.3
1,118,849 - -0.2
1,118,886 + -0.5
1,119,034 - GEMAOFIL_00979 0.29 -1.5
1,119,249 + GEMAOFIL_00979 0.60 +0.4
1,119,249 + GEMAOFIL_00979 0.60 +0.4
1,119,249 + GEMAOFIL_00979 0.60 -0.2
1,119,249 + GEMAOFIL_00979 0.60 -0.0
1,119,250 - GEMAOFIL_00979 0.61 -0.4
1,119,250 - GEMAOFIL_00979 0.61 +0.4
1,119,250 - GEMAOFIL_00979 0.61 +0.3
1,119,250 - GEMAOFIL_00979 0.61 +0.3
1,119,250 - GEMAOFIL_00979 0.61 +0.1
1,119,250 - GEMAOFIL_00979 0.61 +0.5
1,119,251 + GEMAOFIL_00979 0.61 +0.6
1,119,251 + GEMAOFIL_00979 0.61 -0.3
1,119,251 + GEMAOFIL_00979 0.61 +0.4
1,119,252 - GEMAOFIL_00979 0.61 -0.5
1,119,376 - GEMAOFIL_00979 0.79 -1.8
1,119,408 - GEMAOFIL_00979 0.83 +0.8
1,119,607 + +0.4
1,119,630 - GEMAOFIL_00980 0.15 +0.1
1,119,760 + GEMAOFIL_00980 0.75 -0.9
1,119,761 - GEMAOFIL_00980 0.75 +0.5
1,119,793 + +0.8
1,119,793 + -0.2
1,119,793 + +0.1
1,119,794 - +0.1
1,119,794 - +2.4
1,119,794 - +0.5
1,119,794 - +0.7
1,119,801 + -0.5
1,120,030 + -0.5
1,120,031 - +0.2
1,120,031 - +0.3
1,120,652 + -0.1
1,120,653 - -0.4
1,120,653 - -0.2
1,120,664 - +0.8
1,120,709 + +0.2
1,120,709 + +0.1
1,120,710 - +0.3

Or see this region's nucleotide sequence