Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00685 and GEMAOFIL_00686 overlap by 1 nucleotides GEMAOFIL_00686 and GEMAOFIL_00687 overlap by 4 nucleotides GEMAOFIL_00687 and GEMAOFIL_00688 overlap by 1 nucleotides
GEMAOFIL_00685: GEMAOFIL_00685 - Lipopolysaccharide core heptose(I) kinase RfaP, at 801,759 to 802,565
_00685
GEMAOFIL_00686: GEMAOFIL_00686 - hypothetical protein, at 802,565 to 803,299
_00686
GEMAOFIL_00687: GEMAOFIL_00687 - hypothetical protein, at 803,296 to 804,048
_00687
GEMAOFIL_00688: GEMAOFIL_00688 - 3-deoxy-D-manno-octulosonic acid kinase, at 804,048 to 805,487
_00688
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1 at 802.709 kb on + strand, within GEMAOFIL_00686 at 802.710 kb on - strand, within GEMAOFIL_00686 at 802.712 kb on + strand, within GEMAOFIL_00686 at 802.713 kb on - strand, within GEMAOFIL_00686 at 802.868 kb on + strand, within GEMAOFIL_00686 at 803.177 kb on + strand, within GEMAOFIL_00686 at 803.177 kb on + strand, within GEMAOFIL_00686 at 803.220 kb on - strand, within GEMAOFIL_00686 at 803.444 kb on + strand, within GEMAOFIL_00687 at 803.482 kb on + strand, within GEMAOFIL_00687 at 803.593 kb on + strand, within GEMAOFIL_00687 at 803.963 kb on - strand, within GEMAOFIL_00687
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 802,709 + GEMAOFIL_00686 0.20 -0.8 802,710 - GEMAOFIL_00686 0.20 -1.9 802,712 + GEMAOFIL_00686 0.20 -0.9 802,713 - GEMAOFIL_00686 0.20 -1.2 802,868 + GEMAOFIL_00686 0.41 +0.4 803,177 + GEMAOFIL_00686 0.83 -2.5 803,177 + GEMAOFIL_00686 0.83 -1.0 803,220 - GEMAOFIL_00686 0.89 -0.1 803,444 + GEMAOFIL_00687 0.20 +0.6 803,482 + GEMAOFIL_00687 0.25 -0.6 803,593 + GEMAOFIL_00687 0.39 +0.2 803,963 - GEMAOFIL_00687 0.89 -1.1
Or see this region's nucleotide sequence