Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00478 and GEMAOFIL_00479 overlap by 4 nucleotides GEMAOFIL_00479 and GEMAOFIL_00480 are separated by 97 nucleotides
GEMAOFIL_00478: GEMAOFIL_00478 - Protein YdeP, at 542,083 to 544,431
_00478
GEMAOFIL_00479: GEMAOFIL_00479 - Sulfur carrier protein FdhD, at 544,428 to 545,267
_00479
GEMAOFIL_00480: GEMAOFIL_00480 - HTH-type transcriptional regulator HdfR, at 545,365 to 546,252
_00480
Position (kb) 544
545
546 Strain fitness (log2 ratio) -1
0
1
2 at 543.428 kb on + strand, within GEMAOFIL_00478 at 543.904 kb on + strand, within GEMAOFIL_00478 at 543.905 kb on - strand, within GEMAOFIL_00478 at 543.915 kb on - strand, within GEMAOFIL_00478 at 543.953 kb on + strand, within GEMAOFIL_00478 at 544.089 kb on - strand, within GEMAOFIL_00478 at 544.379 kb on + strand at 544.380 kb on - strand at 544.380 kb on - strand at 544.380 kb on - strand at 544.380 kb on - strand at 544.389 kb on - strand at 544.457 kb on - strand at 544.457 kb on - strand at 544.674 kb on - strand, within GEMAOFIL_00479 at 544.736 kb on + strand, within GEMAOFIL_00479 at 544.766 kb on - strand, within GEMAOFIL_00479 at 545.014 kb on + strand, within GEMAOFIL_00479 at 545.014 kb on + strand, within GEMAOFIL_00479 at 545.014 kb on + strand, within GEMAOFIL_00479 at 545.014 kb on + strand, within GEMAOFIL_00479 at 545.015 kb on - strand, within GEMAOFIL_00479 at 545.018 kb on + strand, within GEMAOFIL_00479 at 545.120 kb on + strand, within GEMAOFIL_00479 at 545.123 kb on - strand, within GEMAOFIL_00479 at 545.191 kb on + strand at 545.192 kb on - strand at 545.197 kb on + strand at 545.198 kb on - strand at 545.300 kb on + strand at 545.390 kb on + strand at 545.560 kb on + strand, within GEMAOFIL_00480 at 545.569 kb on + strand, within GEMAOFIL_00480 at 545.570 kb on - strand, within GEMAOFIL_00480 at 545.570 kb on - strand, within GEMAOFIL_00480 at 545.570 kb on - strand, within GEMAOFIL_00480 at 545.572 kb on + strand, within GEMAOFIL_00480 at 545.572 kb on + strand, within GEMAOFIL_00480 at 545.816 kb on + strand, within GEMAOFIL_00480 at 545.816 kb on + strand, within GEMAOFIL_00480 at 545.817 kb on - strand, within GEMAOFIL_00480 at 545.980 kb on - strand, within GEMAOFIL_00480 at 545.980 kb on - strand, within GEMAOFIL_00480 at 546.029 kb on + strand, within GEMAOFIL_00480 at 546.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 543,428 + GEMAOFIL_00478 0.57 +0.1 543,904 + GEMAOFIL_00478 0.78 -1.0 543,905 - GEMAOFIL_00478 0.78 -0.3 543,915 - GEMAOFIL_00478 0.78 -0.4 543,953 + GEMAOFIL_00478 0.80 -0.1 544,089 - GEMAOFIL_00478 0.85 -0.4 544,379 + +0.2 544,380 - +1.2 544,380 - -0.6 544,380 - +0.0 544,380 - +0.3 544,389 - -0.1 544,457 - -0.4 544,457 - -0.8 544,674 - GEMAOFIL_00479 0.29 -0.1 544,736 + GEMAOFIL_00479 0.37 -0.8 544,766 - GEMAOFIL_00479 0.40 -0.6 545,014 + GEMAOFIL_00479 0.70 -0.9 545,014 + GEMAOFIL_00479 0.70 +0.4 545,014 + GEMAOFIL_00479 0.70 +0.5 545,014 + GEMAOFIL_00479 0.70 -0.1 545,015 - GEMAOFIL_00479 0.70 +0.4 545,018 + GEMAOFIL_00479 0.70 -1.7 545,120 + GEMAOFIL_00479 0.82 +0.3 545,123 - GEMAOFIL_00479 0.83 -0.1 545,191 + +0.0 545,192 - +0.8 545,197 + +0.1 545,198 - -0.3 545,300 + +2.1 545,390 + -0.3 545,560 + GEMAOFIL_00480 0.22 +1.8 545,569 + GEMAOFIL_00480 0.23 -0.1 545,570 - GEMAOFIL_00480 0.23 -0.5 545,570 - GEMAOFIL_00480 0.23 +0.5 545,570 - GEMAOFIL_00480 0.23 +1.4 545,572 + GEMAOFIL_00480 0.23 -0.1 545,572 + GEMAOFIL_00480 0.23 -0.2 545,816 + GEMAOFIL_00480 0.51 +0.5 545,816 + GEMAOFIL_00480 0.51 -1.3 545,817 - GEMAOFIL_00480 0.51 +0.1 545,980 - GEMAOFIL_00480 0.69 +0.7 545,980 - GEMAOFIL_00480 0.69 -0.6 546,029 + GEMAOFIL_00480 0.75 -0.1 546,174 + -0.3
Or see this region's nucleotide sequence