Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00457 and GEMAOFIL_00458 are separated by 245 nucleotides GEMAOFIL_00458 and GEMAOFIL_00459 are separated by 214 nucleotides GEMAOFIL_00459 and GEMAOFIL_00460 overlap by 1 nucleotides
GEMAOFIL_00457: GEMAOFIL_00457 - Taurine-binding periplasmic protein, at 519,918 to 520,895
_00457
GEMAOFIL_00458: GEMAOFIL_00458 - Glutamate--cysteine ligase, at 521,141 to 522,724
_00458
GEMAOFIL_00459: GEMAOFIL_00459 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 522,939 to 523,322
_00459
GEMAOFIL_00460: GEMAOFIL_00460 - Protein YhgF, at 523,322 to 525,646
_00460
Position (kb) 521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 520.189 kb on + strand, within GEMAOFIL_00457 at 520.189 kb on + strand, within GEMAOFIL_00457 at 520.363 kb on + strand, within GEMAOFIL_00457 at 520.363 kb on + strand, within GEMAOFIL_00457 at 520.364 kb on - strand, within GEMAOFIL_00457 at 520.364 kb on - strand, within GEMAOFIL_00457 at 520.480 kb on + strand, within GEMAOFIL_00457 at 520.480 kb on + strand, within GEMAOFIL_00457 at 520.481 kb on - strand, within GEMAOFIL_00457 at 520.481 kb on - strand, within GEMAOFIL_00457 at 520.791 kb on + strand, within GEMAOFIL_00457 at 520.792 kb on - strand, within GEMAOFIL_00457 at 520.792 kb on - strand, within GEMAOFIL_00457 at 521.033 kb on - strand at 521.033 kb on - strand at 521.033 kb on - strand at 521.060 kb on + strand at 521.060 kb on + strand at 521.060 kb on + strand at 521.060 kb on + strand at 521.060 kb on + strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.061 kb on - strand at 521.135 kb on - strand at 521.142 kb on + strand at 521.142 kb on + strand at 521.142 kb on + strand at 521.142 kb on + strand at 521.142 kb on + strand at 521.142 kb on + strand at 521.143 kb on - strand at 521.143 kb on - strand at 521.143 kb on - strand at 521.172 kb on + strand at 521.173 kb on - strand at 521.201 kb on + strand at 521.964 kb on + strand, within GEMAOFIL_00458 at 521.964 kb on + strand, within GEMAOFIL_00458 at 521.965 kb on - strand, within GEMAOFIL_00458 at 522.175 kb on + strand, within GEMAOFIL_00458 at 522.177 kb on + strand, within GEMAOFIL_00458 at 522.177 kb on + strand, within GEMAOFIL_00458 at 522.177 kb on + strand, within GEMAOFIL_00458 at 522.193 kb on - strand, within GEMAOFIL_00458 at 522.333 kb on + strand, within GEMAOFIL_00458 at 522.333 kb on + strand, within GEMAOFIL_00458 at 522.334 kb on - strand, within GEMAOFIL_00458 at 522.366 kb on + strand, within GEMAOFIL_00458 at 522.380 kb on - strand, within GEMAOFIL_00458 at 522.426 kb on + strand, within GEMAOFIL_00458 at 522.538 kb on - strand, within GEMAOFIL_00458 at 522.662 kb on + strand at 522.778 kb on + strand at 522.835 kb on + strand at 522.836 kb on - strand at 522.838 kb on + strand at 522.838 kb on + strand at 522.838 kb on + strand at 522.841 kb on + strand at 522.842 kb on - strand at 522.847 kb on + strand at 522.847 kb on + strand at 522.848 kb on - strand at 522.848 kb on - strand at 522.848 kb on - strand at 522.848 kb on - strand at 522.869 kb on + strand at 522.940 kb on + strand at 522.940 kb on + strand at 522.941 kb on - strand at 522.941 kb on - strand at 522.941 kb on - strand at 522.942 kb on + strand at 522.943 kb on - strand at 522.943 kb on - strand at 522.943 kb on - strand at 522.943 kb on - strand at 522.991 kb on + strand, within GEMAOFIL_00459 at 522.992 kb on - strand, within GEMAOFIL_00459 at 522.992 kb on - strand, within GEMAOFIL_00459 at 523.053 kb on + strand, within GEMAOFIL_00459 at 523.054 kb on - strand, within GEMAOFIL_00459 at 523.081 kb on + strand, within GEMAOFIL_00459 at 523.081 kb on + strand, within GEMAOFIL_00459 at 523.082 kb on - strand, within GEMAOFIL_00459 at 523.082 kb on - strand, within GEMAOFIL_00459 at 523.082 kb on - strand, within GEMAOFIL_00459 at 523.158 kb on - strand, within GEMAOFIL_00459 at 523.530 kb on - strand at 523.615 kb on + strand, within GEMAOFIL_00460 at 523.615 kb on + strand, within GEMAOFIL_00460
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 520,189 + GEMAOFIL_00457 0.28 +1.1 520,189 + GEMAOFIL_00457 0.28 +0.2 520,363 + GEMAOFIL_00457 0.46 -0.0 520,363 + GEMAOFIL_00457 0.46 -0.1 520,364 - GEMAOFIL_00457 0.46 -0.2 520,364 - GEMAOFIL_00457 0.46 -0.0 520,480 + GEMAOFIL_00457 0.57 -0.2 520,480 + GEMAOFIL_00457 0.57 +0.8 520,481 - GEMAOFIL_00457 0.58 -0.9 520,481 - GEMAOFIL_00457 0.58 -1.3 520,791 + GEMAOFIL_00457 0.89 -0.7 520,792 - GEMAOFIL_00457 0.89 +0.6 520,792 - GEMAOFIL_00457 0.89 -0.1 521,033 - +0.9 521,033 - +0.3 521,033 - -0.1 521,060 + -0.2 521,060 + -0.1 521,060 + -0.2 521,060 + +0.0 521,060 + -0.5 521,061 - +0.6 521,061 - +0.2 521,061 - -0.3 521,061 - +0.3 521,061 - -0.2 521,061 - +0.6 521,061 - -1.2 521,135 - -0.2 521,142 + +0.3 521,142 + +0.4 521,142 + -0.5 521,142 + -0.0 521,142 + -0.2 521,142 + -1.8 521,143 - +0.2 521,143 - +0.5 521,143 - +1.2 521,172 + -0.7 521,173 - +1.0 521,201 + +0.5 521,964 + GEMAOFIL_00458 0.52 -2.8 521,964 + GEMAOFIL_00458 0.52 +0.0 521,965 - GEMAOFIL_00458 0.52 -2.8 522,175 + GEMAOFIL_00458 0.65 -1.8 522,177 + GEMAOFIL_00458 0.65 +0.4 522,177 + GEMAOFIL_00458 0.65 -1.8 522,177 + GEMAOFIL_00458 0.65 -2.2 522,193 - GEMAOFIL_00458 0.66 -0.8 522,333 + GEMAOFIL_00458 0.75 -0.3 522,333 + GEMAOFIL_00458 0.75 -0.4 522,334 - GEMAOFIL_00458 0.75 -0.2 522,366 + GEMAOFIL_00458 0.77 -1.2 522,380 - GEMAOFIL_00458 0.78 -0.7 522,426 + GEMAOFIL_00458 0.81 -2.2 522,538 - GEMAOFIL_00458 0.88 -0.4 522,662 + -2.6 522,778 + +0.7 522,835 + +0.2 522,836 - +0.1 522,838 + -0.4 522,838 + -0.5 522,838 + -0.1 522,841 + +0.1 522,842 - +0.2 522,847 + -1.1 522,847 + +0.6 522,848 - -1.8 522,848 - -0.5 522,848 - +0.2 522,848 - -0.4 522,869 + -0.4 522,940 + +0.1 522,940 + -0.2 522,941 - +0.2 522,941 - -0.7 522,941 - -0.3 522,942 + +0.1 522,943 - +0.1 522,943 - -1.7 522,943 - -1.3 522,943 - +0.1 522,991 + GEMAOFIL_00459 0.14 +0.1 522,992 - GEMAOFIL_00459 0.14 +0.2 522,992 - GEMAOFIL_00459 0.14 +0.7 523,053 + GEMAOFIL_00459 0.30 -0.2 523,054 - GEMAOFIL_00459 0.30 +0.1 523,081 + GEMAOFIL_00459 0.37 -0.4 523,081 + GEMAOFIL_00459 0.37 +0.2 523,082 - GEMAOFIL_00459 0.37 -0.8 523,082 - GEMAOFIL_00459 0.37 -0.1 523,082 - GEMAOFIL_00459 0.37 -0.1 523,158 - GEMAOFIL_00459 0.57 +0.9 523,530 - +0.5 523,615 + GEMAOFIL_00460 0.13 +0.7 523,615 + GEMAOFIL_00460 0.13 +0.0
Or see this region's nucleotide sequence