Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00413 and GEMAOFIL_00414 are separated by 83 nucleotides GEMAOFIL_00414 and GEMAOFIL_00415 overlap by 6 nucleotides GEMAOFIL_00415 and GEMAOFIL_00416 are separated by 24 nucleotides GEMAOFIL_00416 and GEMAOFIL_00417 are separated by 100 nucleotides
GEMAOFIL_00413: GEMAOFIL_00413 - hypothetical protein, at 476,941 to 477,468
_00413
GEMAOFIL_00414: GEMAOFIL_00414 - CRP-like cAMP-activated global transcriptional regulator, at 477,552 to 478,238
_00414
GEMAOFIL_00415: GEMAOFIL_00415 - 5-hydroxyisourate hydrolase, at 478,233 to 478,643
_00415
GEMAOFIL_00416: GEMAOFIL_00416 - hypothetical protein, at 478,668 to 479,141
_00416
GEMAOFIL_00417: GEMAOFIL_00417 - Transcriptional activator protein CzcR, at 479,242 to 479,607
_00417
Position (kb) 478
479 Strain fitness (log2 ratio) -1
0
1 at 477.275 kb on + strand, within GEMAOFIL_00413 at 477.394 kb on - strand, within GEMAOFIL_00413 at 477.394 kb on - strand, within GEMAOFIL_00413 at 477.429 kb on - strand at 477.437 kb on + strand at 477.483 kb on + strand at 477.484 kb on - strand at 477.570 kb on + strand at 477.620 kb on - strand at 477.620 kb on - strand at 477.672 kb on + strand, within GEMAOFIL_00414 at 477.673 kb on - strand, within GEMAOFIL_00414 at 477.708 kb on + strand, within GEMAOFIL_00414 at 477.708 kb on + strand, within GEMAOFIL_00414 at 478.198 kb on + strand at 478.198 kb on + strand at 478.198 kb on + strand at 478.199 kb on - strand at 478.234 kb on + strand at 478.234 kb on + strand at 478.235 kb on - strand at 478.288 kb on + strand, within GEMAOFIL_00415 at 478.288 kb on + strand, within GEMAOFIL_00415 at 478.289 kb on - strand, within GEMAOFIL_00415 at 478.484 kb on + strand, within GEMAOFIL_00415 at 478.492 kb on - strand, within GEMAOFIL_00415 at 478.907 kb on - strand, within GEMAOFIL_00416 at 478.907 kb on - strand, within GEMAOFIL_00416 at 479.173 kb on + strand at 479.174 kb on - strand at 479.221 kb on - strand at 479.221 kb on - strand at 479.236 kb on + strand at 479.236 kb on + strand at 479.236 kb on + strand at 479.236 kb on + strand at 479.237 kb on - strand at 479.255 kb on + strand at 479.256 kb on - strand at 479.256 kb on - strand at 479.375 kb on - strand, within GEMAOFIL_00417 at 479.530 kb on + strand, within GEMAOFIL_00417 at 479.531 kb on - strand, within GEMAOFIL_00417
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 477,275 + GEMAOFIL_00413 0.63 -0.3 477,394 - GEMAOFIL_00413 0.86 +0.8 477,394 - GEMAOFIL_00413 0.86 +0.8 477,429 - -0.4 477,437 + +0.0 477,483 + -0.2 477,484 - -1.5 477,570 + +0.1 477,620 - -1.4 477,620 - -0.4 477,672 + GEMAOFIL_00414 0.17 -0.4 477,673 - GEMAOFIL_00414 0.18 -0.1 477,708 + GEMAOFIL_00414 0.23 -0.2 477,708 + GEMAOFIL_00414 0.23 +1.3 478,198 + +0.9 478,198 + +0.2 478,198 + -0.5 478,199 - -0.7 478,234 + -1.2 478,234 + +0.2 478,235 - -0.3 478,288 + GEMAOFIL_00415 0.13 +0.7 478,288 + GEMAOFIL_00415 0.13 +0.2 478,289 - GEMAOFIL_00415 0.14 +1.6 478,484 + GEMAOFIL_00415 0.61 -0.1 478,492 - GEMAOFIL_00415 0.63 +0.3 478,907 - GEMAOFIL_00416 0.50 -0.0 478,907 - GEMAOFIL_00416 0.50 -0.0 479,173 + +0.0 479,174 - -0.0 479,221 - -0.1 479,221 - +0.0 479,236 + +0.1 479,236 + -0.8 479,236 + +0.8 479,236 + -0.1 479,237 - -1.3 479,255 + -0.7 479,256 - +0.1 479,256 - -0.2 479,375 - GEMAOFIL_00417 0.36 -0.2 479,530 + GEMAOFIL_00417 0.79 +0.1 479,531 - GEMAOFIL_00417 0.79 +0.7
Or see this region's nucleotide sequence