Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06930 and MPMX19_06931 are separated by 14 nucleotides MPMX19_06931 and MPMX19_06932 are separated by 548 nucleotides MPMX19_06932 and MPMX19_06933 are separated by 137 nucleotides MPMX19_06933 and MPMX19_06934 overlap by 4 nucleotides
MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331
_06930
MPMX19_06931: MPMX19_06931 - hypothetical protein, at 204,346 to 204,669
_06931
MPMX19_06932: MPMX19_06932 - hypothetical protein, at 205,218 to 205,895
_06932
MPMX19_06933: MPMX19_06933 - Manganese transport system ATP-binding protein MntB, at 206,033 to 206,803
_06933
MPMX19_06934: MPMX19_06934 - Manganese transport system membrane protein MntB, at 206,800 to 207,684
_06934
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1 at 204.405 kb on - strand, within MPMX19_06931 at 204.847 kb on + strand at 204.847 kb on + strand at 204.848 kb on - strand at 204.971 kb on - strand at 205.319 kb on - strand, within MPMX19_06932 at 205.344 kb on - strand, within MPMX19_06932 at 205.344 kb on - strand, within MPMX19_06932 at 205.344 kb on - strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.536 kb on + strand, within MPMX19_06932 at 205.537 kb on - strand, within MPMX19_06932 at 205.537 kb on - strand, within MPMX19_06932 at 205.537 kb on - strand, within MPMX19_06932 at 205.537 kb on - strand, within MPMX19_06932 at 205.647 kb on + strand, within MPMX19_06932 at 205.647 kb on + strand, within MPMX19_06932 at 205.647 kb on + strand, within MPMX19_06932 at 205.890 kb on + strand at 205.890 kb on + strand at 205.890 kb on + strand at 206.276 kb on + strand, within MPMX19_06933 at 206.276 kb on + strand, within MPMX19_06933 at 206.277 kb on - strand, within MPMX19_06933 at 206.277 kb on - strand, within MPMX19_06933 at 206.277 kb on - strand, within MPMX19_06933 at 206.809 kb on + strand at 206.809 kb on + strand at 206.810 kb on - strand at 206.810 kb on - strand at 206.810 kb on - strand at 206.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 204,405 - MPMX19_06931 0.18 -1.0 204,847 + +1.1 204,847 + -0.0 204,848 - -0.9 204,971 - +0.5 205,319 - MPMX19_06932 0.15 +0.1 205,344 - MPMX19_06932 0.19 -0.3 205,344 - MPMX19_06932 0.19 +0.7 205,344 - MPMX19_06932 0.19 -0.7 205,536 + MPMX19_06932 0.47 +0.8 205,536 + MPMX19_06932 0.47 -1.6 205,536 + MPMX19_06932 0.47 -0.4 205,536 + MPMX19_06932 0.47 +0.1 205,536 + MPMX19_06932 0.47 -0.1 205,536 + MPMX19_06932 0.47 -0.5 205,537 - MPMX19_06932 0.47 -1.3 205,537 - MPMX19_06932 0.47 -1.8 205,537 - MPMX19_06932 0.47 +1.7 205,537 - MPMX19_06932 0.47 -0.5 205,647 + MPMX19_06932 0.63 -1.3 205,647 + MPMX19_06932 0.63 +0.5 205,647 + MPMX19_06932 0.63 -2.3 205,890 + -1.3 205,890 + -0.9 205,890 + -1.9 206,276 + MPMX19_06933 0.32 +0.1 206,276 + MPMX19_06933 0.32 -0.5 206,277 - MPMX19_06933 0.32 -0.1 206,277 - MPMX19_06933 0.32 -0.9 206,277 - MPMX19_06933 0.32 +0.8 206,809 + +0.7 206,809 + -1.0 206,810 - +1.3 206,810 - +0.1 206,810 - -2.0 206,810 - -0.2
Or see this region's nucleotide sequence