Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06928 and MPMX19_06929 are separated by 308 nucleotides MPMX19_06929 and MPMX19_06930 are separated by 316 nucleotides MPMX19_06930 and MPMX19_06931 are separated by 14 nucleotides MPMX19_06931 and MPMX19_06932 are separated by 548 nucleotides
MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020
_06928
MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646
_06929
MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331
_06930
MPMX19_06931: MPMX19_06931 - hypothetical protein, at 204,346 to 204,669
_06931
MPMX19_06932: MPMX19_06932 - hypothetical protein, at 205,218 to 205,895
_06932
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1 at 203.221 kb on + strand at 203.221 kb on + strand at 203.378 kb on + strand, within MPMX19_06929 at 203.435 kb on + strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.775 kb on + strand at 203.776 kb on - strand at 203.810 kb on + strand at 203.811 kb on - strand at 203.826 kb on + strand at 203.843 kb on - strand at 203.862 kb on + strand at 203.863 kb on - strand at 203.863 kb on - strand at 204.030 kb on + strand, within MPMX19_06930 at 204.030 kb on + strand, within MPMX19_06930 at 204.031 kb on - strand, within MPMX19_06930 at 204.031 kb on - strand, within MPMX19_06930 at 204.405 kb on - strand, within MPMX19_06931 at 204.847 kb on + strand at 204.847 kb on + strand at 204.848 kb on - strand at 204.971 kb on - strand at 205.319 kb on - strand, within MPMX19_06932
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 203,221 + +0.2 203,221 + +1.0 203,378 + MPMX19_06929 0.15 -0.9 203,435 + MPMX19_06929 0.33 +1.0 203,436 - MPMX19_06929 0.34 -2.4 203,436 - MPMX19_06929 0.34 +1.1 203,436 - MPMX19_06929 0.34 -1.3 203,436 - MPMX19_06929 0.34 -0.8 203,436 - MPMX19_06929 0.34 -1.5 203,775 + +0.2 203,776 - -0.4 203,810 + -0.3 203,811 - -1.7 203,826 + +0.2 203,843 - +0.8 203,862 + -0.2 203,863 - -0.2 203,863 - +0.6 204,030 + MPMX19_06930 0.18 +0.5 204,030 + MPMX19_06930 0.18 -0.2 204,031 - MPMX19_06930 0.18 -0.3 204,031 - MPMX19_06930 0.18 -1.1 204,405 - MPMX19_06931 0.18 -1.0 204,847 + +1.1 204,847 + -0.0 204,848 - -0.9 204,971 - +0.5 205,319 - MPMX19_06932 0.15 +0.1
Or see this region's nucleotide sequence