Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06791

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06790 and MPMX19_06791 are separated by 247 nucleotidesMPMX19_06791 and MPMX19_06792 are separated by 75 nucleotides MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621 _06790 MPMX19_06791: MPMX19_06791 - Leucine-responsive regulatory protein, at 56,869 to 57,345 _06791 MPMX19_06792: MPMX19_06792 - 2-hydroxymuconic semialdehyde dehydrogenase, at 57,421 to 58,944 _06792 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.315 kb on - strand, within MPMX19_06790at 56.315 kb on - strand, within MPMX19_06790at 56.521 kb on + strandat 56.521 kb on + strandat 56.522 kb on - strandat 56.522 kb on - strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.706 kb on + strandat 56.707 kb on - strandat 56.707 kb on - strandat 56.790 kb on + strandat 56.791 kb on - strandat 56.818 kb on + strandat 56.819 kb on - strandat 56.831 kb on + strandat 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.011 kb on - strand, within MPMX19_06791at 57.022 kb on + strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.087 kb on - strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.220 kb on + strand, within MPMX19_06791at 57.221 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.280 kb on + strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.485 kb on + strandat 57.486 kb on - strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.501 kb on - strandat 57.501 kb on - strandat 57.650 kb on + strand, within MPMX19_06792at 57.650 kb on + strand, within MPMX19_06792at 57.651 kb on - strand, within MPMX19_06792at 57.651 kb on - strand, within MPMX19_06792at 57.666 kb on - strand, within MPMX19_06792at 57.666 kb on - strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 58.018 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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56,314 + MPMX19_06790 0.77 -0.9
56,314 + MPMX19_06790 0.77 -0.9
56,314 + MPMX19_06790 0.77 +0.9
56,314 + MPMX19_06790 0.77 +2.0
56,314 + MPMX19_06790 0.77 -0.1
56,315 - MPMX19_06790 0.77 -0.9
56,315 - MPMX19_06790 0.77 -1.1
56,521 + +0.4
56,521 + +0.7
56,522 - -1.7
56,522 - +0.3
56,655 + -0.6
56,655 + -0.7
56,655 + +0.3
56,656 - -1.2
56,656 - -0.5
56,656 - -0.0
56,706 + -1.5
56,707 - -0.5
56,707 - +1.3
56,790 + -0.3
56,791 - +0.2
56,818 + -0.7
56,819 - -1.3
56,831 + -0.1
57,010 + MPMX19_06791 0.30 -0.9
57,010 + MPMX19_06791 0.30 -0.2
57,010 + MPMX19_06791 0.30 +0.4
57,011 - MPMX19_06791 0.30 -0.8
57,022 + MPMX19_06791 0.32 -1.9
57,023 - MPMX19_06791 0.32 -1.0
57,023 - MPMX19_06791 0.32 +0.3
57,086 + MPMX19_06791 0.45 +0.2
57,086 + MPMX19_06791 0.45 -1.9
57,087 - MPMX19_06791 0.46 -1.2
57,184 + MPMX19_06791 0.66 +0.4
57,184 + MPMX19_06791 0.66 -1.5
57,184 + MPMX19_06791 0.66 -0.5
57,185 - MPMX19_06791 0.66 +0.1
57,185 - MPMX19_06791 0.66 -0.2
57,185 - MPMX19_06791 0.66 -1.3
57,220 + MPMX19_06791 0.74 -2.0
57,221 - MPMX19_06791 0.74 -2.7
57,272 - MPMX19_06791 0.84 +0.5
57,272 - MPMX19_06791 0.84 -0.3
57,272 - MPMX19_06791 0.84 -0.5
57,272 - MPMX19_06791 0.84 -0.3
57,280 + MPMX19_06791 0.86 -0.8
57,281 - MPMX19_06791 0.86 -0.5
57,281 - MPMX19_06791 0.86 -0.1
57,485 + -0.7
57,486 - +0.5
57,500 + -0.2
57,500 + -0.4
57,500 + -1.5
57,501 - -1.3
57,501 - -1.5
57,650 + MPMX19_06792 0.15 +0.1
57,650 + MPMX19_06792 0.15 +0.7
57,651 - MPMX19_06792 0.15 -0.8
57,651 - MPMX19_06792 0.15 -2.2
57,666 - MPMX19_06792 0.16 -0.8
57,666 - MPMX19_06792 0.16 +0.3
57,800 + MPMX19_06792 0.25 -0.3
57,800 + MPMX19_06792 0.25 -0.5
57,800 + MPMX19_06792 0.25 +0.4
57,800 + MPMX19_06792 0.25 +0.4
57,800 + MPMX19_06792 0.25 -0.2
57,800 + MPMX19_06792 0.25 -0.2
57,800 + MPMX19_06792 0.25 -1.3
57,800 + MPMX19_06792 0.25 +0.5
57,800 + MPMX19_06792 0.25 +0.1
57,800 + MPMX19_06792 0.25 -0.2
57,800 + MPMX19_06792 0.25 +1.1
57,800 + MPMX19_06792 0.25 -0.2
57,800 + MPMX19_06792 0.25 -0.2
57,800 + MPMX19_06792 0.25 -2.3
57,800 + MPMX19_06792 0.25 -0.6
57,800 + MPMX19_06792 0.25 +0.5
57,800 + MPMX19_06792 0.25 -1.2
57,800 + MPMX19_06792 0.25 +0.2
57,800 + MPMX19_06792 0.25 -0.5
57,800 + MPMX19_06792 0.25 -1.1
57,801 - MPMX19_06792 0.25 +0.4
57,801 - MPMX19_06792 0.25 -0.2
57,801 - MPMX19_06792 0.25 +0.2
57,801 - MPMX19_06792 0.25 +0.1
57,801 - MPMX19_06792 0.25 -1.3
57,801 - MPMX19_06792 0.25 -0.1
57,801 - MPMX19_06792 0.25 +0.0
57,801 - MPMX19_06792 0.25 -2.0
57,801 - MPMX19_06792 0.25 -0.8
57,801 - MPMX19_06792 0.25 -0.5
57,801 - MPMX19_06792 0.25 -0.3
57,801 - MPMX19_06792 0.25 -1.3
58,018 + MPMX19_06792 0.39 +0.7
58,064 + MPMX19_06792 0.42 -0.3
58,064 + MPMX19_06792 0.42 -1.4
58,064 + MPMX19_06792 0.42 +0.6
58,064 + MPMX19_06792 0.42 -0.3
58,065 - MPMX19_06792 0.42 -0.3
58,065 - MPMX19_06792 0.42 -0.5
58,065 - MPMX19_06792 0.42 +2.7
58,065 - MPMX19_06792 0.42 +0.1

Or see this region's nucleotide sequence